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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G11610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 532aa MW: 57405 Da PI: 7.6397 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.7 | 3.9e-19 | 69 | 102 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgtt+Tp+WR+gp+g++tLCnaC ++yr+ + ONIVA10G11610.1 69 CRHCGTTETPQWRHGPEGHRTLCNACSVRYRSGK 102 *******************************976 PP | |||||||
2 | GATA | 48.4 | 1.3e-15 | 241 | 274 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++CgttkTp WR gpd ++LCnaCG +y++ ONIVA10G11610.1 241 CAHCGTTKTPAWRLGPDSRRKLCNACGNKYQSGQ 274 ******************************9875 PP | |||||||
3 | GATA | 47.6 | 2.2e-15 | 459 | 493 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++CgttkTp W +gpd +LCnaCG yrk +l ONIVA10G11610.1 459 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 493 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.9E-14 | 61 | 124 | No hit | No description |
PROSITE profile | PS50114 | 12.637 | 63 | 99 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.6E-15 | 63 | 117 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.5E-14 | 67 | 101 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.94E-13 | 68 | 117 | No hit | No description |
Pfam | PF00320 | 1.3E-16 | 69 | 102 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.47E-10 | 234 | 272 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-12 | 235 | 290 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 2.0E-7 | 235 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.492 | 235 | 267 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.81E-8 | 240 | 267 | No hit | No description |
Pfam | PF00320 | 5.5E-14 | 241 | 274 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.21 | 391 | 436 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.66E-11 | 452 | 514 | No hit | No description |
SMART | SM00401 | 1.5E-8 | 453 | 507 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.093 | 453 | 489 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-10 | 457 | 491 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.77E-10 | 458 | 507 | No hit | No description |
Pfam | PF00320 | 1.7E-13 | 459 | 493 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MVVVDGLHDG GGGDLKALLD DAGVDDVAAR GGGGGGGEVE EEVERPSNED AFPAVEKMAT 60 AAAAKGLQCR HCGTTETPQW RHGPEGHRTL CNACSVRYRS GKLVPEYRPL RCPTFSPELH 120 SNRHHRVLQL RRRPGPQSAA PSPAAVARCG GEAKEEEEEL AWVSNKDAFA TVETTMAPSP 180 RVVETPPEHD HRPANIPTTS PEPHSDRPRR VVQLPRRLQE PSASANLAHA VAATARAGRE 240 CAHCGTTKTP AWRLGPDSRR KLCNACGNKY QSGQLNSTTF SQNSQEQKKK SKSSACSRER 300 KRSVVAATVV VGGGLRDDAA AIADEHLDGG DLQALLDDVA LDDVAARGGG DAGEAKEEEE 360 ELEWLSNKDA FPTVETMSPA PPENRTKAPV PPAGWQCRHC GSTETPLWHE RDGPAEAEHV 420 RKEETPPNIS PATKHRRIVD LLRCSTALNT AATAVERRCT HCGTTKTPAW LSGPDSRGKL 480 CNACGKQYRK GRLVPEYRPL NCPTFSPELH SNAHAHRRRR ESPVAIAIAG EK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613898.1 | 0.0 | GATA-type transcription factor sreA | ||||
TrEMBL | A0A0E0ISY1 | 0.0 | A0A0E0ISY1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G11610.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15709 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 3e-24 | GATA transcription factor 1 |