PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G11610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 532aa    MW: 57405 Da    PI: 7.6397
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G11610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.9e-1969102134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cgtt+Tp+WR+gp+g++tLCnaC ++yr+ +
  ONIVA10G11610.1  69 CRHCGTTETPQWRHGPEGHRTLCNACSVRYRSGK 102
                      *******************************976 PP

2GATA48.41.3e-15241274134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp WR gpd  ++LCnaCG +y++  
  ONIVA10G11610.1 241 CAHCGTTKTPAWRLGPDSRRKLCNACGNKYQSGQ 274
                      ******************************9875 PP

3GATA47.62.2e-15459493135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++CgttkTp W +gpd   +LCnaCG  yrk +l
  ONIVA10G11610.1 459 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 493
                      ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.9E-1461124No hitNo description
PROSITE profilePS5011412.6376399IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-1563117IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.5E-1467101IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.94E-1368117No hitNo description
PfamPF003201.3E-1669102IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-10234272No hitNo description
Gene3DG3DSA:3.30.50.101.9E-12235290IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.0E-7235292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.492235267IPR000679Zinc finger, GATA-type
CDDcd002022.81E-8240267No hitNo description
PfamPF003205.5E-14241274IPR000679Zinc finger, GATA-type
SMARTSM004010.21391436IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11452514No hitNo description
SMARTSM004011.5E-8453507IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.093453489IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-10457491IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.77E-10458507No hitNo description
PfamPF003201.7E-13459493IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MVVVDGLHDG GGGDLKALLD DAGVDDVAAR GGGGGGGEVE EEVERPSNED AFPAVEKMAT  60
AAAAKGLQCR HCGTTETPQW RHGPEGHRTL CNACSVRYRS GKLVPEYRPL RCPTFSPELH  120
SNRHHRVLQL RRRPGPQSAA PSPAAVARCG GEAKEEEEEL AWVSNKDAFA TVETTMAPSP  180
RVVETPPEHD HRPANIPTTS PEPHSDRPRR VVQLPRRLQE PSASANLAHA VAATARAGRE  240
CAHCGTTKTP AWRLGPDSRR KLCNACGNKY QSGQLNSTTF SQNSQEQKKK SKSSACSRER  300
KRSVVAATVV VGGGLRDDAA AIADEHLDGG DLQALLDDVA LDDVAARGGG DAGEAKEEEE  360
ELEWLSNKDA FPTVETMSPA PPENRTKAPV PPAGWQCRHC GSTETPLWHE RDGPAEAEHV  420
RKEETPPNIS PATKHRRIVD LLRCSTALNT AATAVERRCT HCGTTKTPAW LSGPDSRGKL  480
CNACGKQYRK GRLVPEYRPL NCPTFSPELH SNAHAHRRRR ESPVAIAIAG EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613898.10.0GATA-type transcription factor sreA
TrEMBLA0A0E0ISY10.0A0A0E0ISY1_ORYNI; Uncharacterized protein
STRINGONIVA10G11610.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-24GATA transcription factor 1