PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G07730.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1017aa    MW: 113594 Da    PI: 6.0699
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G07730.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.7e-56201372118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f
  ONIVA10G07730.3  20 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 113
                      45559***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+Lee++ +ivlvhyle+k
  ONIVA10G07730.3 114 QRRTYWMLEEDFMHIVLVHYLETK 137
                      *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9316142IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038598.3E-5022135IPR005559CG-1 DNA-binding domain
CDDcd001020.00533437525No hitNo description
Gene3DG3DSA:2.60.40.101.7E-6437523IPR013783Immunoglobulin-like fold
PfamPF018331.8E-8438516IPR002909IPT domain
SuperFamilySSF812962.96E-18438524IPR014756Immunoglobulin E-set
SuperFamilySSF484032.64E-15630733IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.2E-16632735IPR020683Ankyrin repeat-containing domain
CDDcd002041.94E-11633731No hitNo description
PROSITE profilePS5029715.433639733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736672704IPR002110Ankyrin repeat
SuperFamilySSF525405.31E-8831885IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37834856IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748835864IPR000048IQ motif, EF-hand binding site
PfamPF006120.023836855IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059857879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542859882IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4860879IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    Send to blast
MAADARRFAV VPQLDIAQIL KEAQQRWLRP AEICEILKNY KSFRIAPEPP NRPQSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM  120
LEEDFMHIVL VHYLETKGGK SRTRGNNDMH QAAVMDSPLS QLPSQTIDGE SSLSGQFSEY  180
EEAESGGTGY HSFTQMQQQQ NGIGPVTDAS MFSSRVSASS IGNYQGQHAM GHTTNFYSSS  240
QHDSPLVLSD PNLELENNGH ESLWNGVMKT DEGTVQMTHL QPPVHPEQGM FTTEGQGVEY  300
LTFDEVYSDG LSLKDIGAAG ADVEPFWQLS SATADISATE NSVQQNDGSL GAAIGFPFLK  360
TQSSNLSDIL KDSFKKSDSF TRWMSKELLD VEDSQIQSSS GAYWNTEEAD SIIEASSREP  420
LDQFTVAPMV LQDQLFSIVD FSPSWTYAGS KTKVLVTGRF LHANEVTERC KWSCMFGEVE  480
IQAEISADGT LRCYSPPHKP GRVPFYVTCS NRLACSEVRE FEFRPSDSQY MDAPSPLGAT  540
NKVYFQIRLD NLLSLGPDVY QATITNPSKE MIDLSKKISS LLANNDEWSK LLKLADDNEP  600
LSHDQQDQYA ENLIKEKLHV WLLHKVGNGG KGPSVLDDEG LGVLHLAAAL GYDWAIRPTV  660
TAGVNINFRD FHGWTALHWA AFCGRERTVV ALIALGAAPG ALTDPHPNYP AESTPADLAS  720
ANGHKGISGF LAESSLTSHL QALNLKEANM SEISGLPGIG DITERNASQP AIGDSLGAVR  780
NAAQAAARIY QVFRVQSFQR KQAVQYEGDK GGISDEHTLS LLSMKPSKSG QLDPLHAAAS  840
RIQNKYRGWK GRKEFLLFRQ RIVKIQAHVR GHQVRKHYRK IVWSVGIVEK VILRWRRRRA  900
GLRGFRPTEG AIESSSGGTS SNLVTDKPAG DDYDFLQEGR KQTEERLQKA LARVKSMVQY  960
PEARDQYQRI LNVVSKMQES QTVQEKILDE STEMDEGDFM SEFKELWDDD TPLPGYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLA0A0E0IRG60.0A0A0E0IRG6_ORYNI; Uncharacterized protein
STRINGONIVA10G07730.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains