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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G07730.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1031aa MW: 115154 Da PI: 6.0086 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.6 | 3.8e-56 | 20 | 137 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f ONIVA10G07730.2 20 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 113 45559***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhyle+k ONIVA10G07730.2 114 QRRTYWMLEEDFMHIVLVHYLETK 137 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.93 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-77 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.5E-50 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.8E-6 | 451 | 537 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 0.00541 | 451 | 539 | No hit | No description |
Pfam | PF01833 | 1.9E-8 | 452 | 530 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.96E-18 | 452 | 538 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.8E-15 | 644 | 747 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.3E-16 | 646 | 749 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.98E-11 | 647 | 745 | No hit | No description |
PROSITE profile | PS50297 | 15.433 | 653 | 747 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 686 | 718 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 5.31E-8 | 845 | 899 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 848 | 870 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 849 | 878 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.023 | 850 | 869 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 871 | 893 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 873 | 896 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.0E-4 | 874 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1031 aa Download sequence Send to blast |
MAADARRFAV VPQLDIAQIL KEAQQRWLRP AEICEILKNY KSFRIAPEPP NRPQSGSLFL 60 FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM 120 LEEDFMHIVL VHYLETKGGK SRTRGNNDMH QAAVMDSPLS QLPSQTIDGE SSLSGQFSEY 180 EEAESGGTGY HSFTQMQQQQ NGIGPVTDAS MFSSRVSASS IGNYQGQHAM GHTTNFYSSS 240 QHDSPLVLSD PNLELENNGH ESLWNGVMKT DEGTVQMTHL QPPVHPEQGM FTTEGQGVEY 300 LTFDEVYSDG LSLKDIGAAG ADVEPFWQFS SNSYLTEAIA FQLSSATADI SATENSVQQN 360 DGSLGAAIGF PFLKTQSSNL SDILKDSFKK SDSFTRWMSK ELLDVEDSQI QSSSGAYWNT 420 EEADSIIEAS SREPLDQFTV APMVLQDQLF SIVDFSPSWT YAGSKTKVLV TGRFLHANEV 480 TERCKWSCMF GEVEIQAEIS ADGTLRCYSP PHKPGRVPFY VTCSNRLACS EVREFEFRPS 540 DSQYMDAPSP LGATNKVYFQ IRLDNLLSLG PDVYQATITN PSKEMIDLSK KISSLLANND 600 EWSKLLKLAD DNEPLSHDQQ DQYAENLIKE KLHVWLLHKV GNGGKGPSVL DDEGLGVLHL 660 AAALGYDWAI RPTVTAGVNI NFRDFHGWTA LHWAAFCGRE RTVVALIALG AAPGALTDPH 720 PNYPAESTPA DLASANGHKG ISGFLAESSL TSHLQALNLK EANMSEISGL PGIGDITERN 780 ASQPAIGDSL GAVRNAAQAA ARIYQVFRVQ SFQRKQAVQY EGDKGGISDE HTLSLLSMKP 840 SKSGQLDPLH AAASRIQNKY RGWKGRKEFL LFRQRIVKIQ AHVRGHQVRK HYRKIVWSVG 900 IVEKVILRWR RRRAGLRGFR PTEGAIESSS GGTSSNLVTD KPAGDDYDFL QEGRKQTEER 960 LQKALARVKS MVQYPEARDQ YQRILNVVSK MQESQTVQEK ILDESTEMDE GDFMSEFKEL 1020 WDDDTPLPGY F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614397.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X2 | ||||
TrEMBL | A0A0E0IRG5 | 0.0 | A0A0E0IRG5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G07730.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |