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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G07730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 969aa MW: 108242 Da PI: 6.3223 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.7 | 3.5e-56 | 20 | 137 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f ONIVA10G07730.1 20 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 113 45559***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhyle+k ONIVA10G07730.1 114 QRRTYWMLEEDFMHIVLVHYLETK 137 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.93 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-77 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.8E-50 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF48403 | 2.49E-15 | 582 | 685 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.1E-16 | 584 | 687 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.82E-11 | 585 | 683 | No hit | No description |
PROSITE profile | PS50297 | 15.433 | 591 | 685 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 624 | 656 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 3.98E-8 | 783 | 837 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 786 | 808 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 787 | 816 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.022 | 788 | 807 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 809 | 831 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 811 | 834 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-4 | 812 | 831 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 969 aa Download sequence Send to blast |
MAADARRFAV VPQLDIAQIL KEAQQRWLRP AEICEILKNY KSFRIAPEPP NRPQSGSLFL 60 FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE RLKSGSIDVL HCYYAHGEEN ENFQRRTYWM 120 LEEDFMHIVL VHYLETKGGK SRTRGNNDMH QAAVMDSPLS QLPSQTIDGE SSLSGQFSEY 180 EEAESGGTGY HSFTQMQQQQ NGIGPVTDAS MFSSRVSASS IGNYQGQHAM GHTTNFYSSS 240 QHDSPLVLSD PNLELENNGH ESLWNGVMKT DEGTVQMTHL QPPVHPEQGM FTTEGQGVEY 300 LTFDEVYSDG LSLKDIGAAG ADVEPFWQLS SATADISATE NSVQQNDGSL GAAIGFPFLK 360 TQSSNLSDIL KDSFKKSDSF TRWMSKELLD VEDSQIQSSS GAYWNTEEAD SIIEASSREP 420 LDQFTVAPMV LQDQLFSIVD FSPSWTYAGS KTKLLVDSYM LMKSRRDASG HACLEKLKFK 480 RRFQQMGLSD VILPRINQAE SLSMSPVPTD VYQATITNPS KEMIDLSKKI SSLLANNDEW 540 SKLLKLADDN EPLSHDQQDQ YAENLIKEKL HVWLLHKVGN GGKGPSVLDD EGLGVLHLAA 600 ALGYDWAIRP TVTAGVNINF RDFHGWTALH WAAFCGRERT VVALIALGAA PGALTDPHPN 660 YPAESTPADL ASANGHKGIS GFLAESSLTS HLQALNLKEA NMSEISGLPG IGDITERNAS 720 QPAIGDSLGA VRNAAQAAAR IYQVFRVQSF QRKQAVQYEG DKGGISDEHT LSLLSMKPSK 780 SGQLDPLHAA ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV 840 EKVILRWRRR RAGLRGFRPT EGAIESSSGG TSSNLVTDKP AGDDYDFLQE GRKQTEERLQ 900 KALARVKSMV QYPEARDQYQ RILNVVSKMQ ESQTVQEKIL DESTEMDEGD FMSEFKELWD 960 DDTPLPGYF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614397.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X2 | ||||
TrEMBL | A0A0E0IRG4 | 0.0 | A0A0E0IRG4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G07730.2 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |