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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G05260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 471aa MW: 51140.4 Da PI: 4.8201 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 82.7 | 3e-26 | 193 | 258 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++lle +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek+ kn irwkg ONIVA10G05260.1 193 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 258 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01217 | 9.6E-10 | 8 | 24 | No hit | No description |
PRINTS | PR01217 | 9.6E-10 | 33 | 45 | No hit | No description |
PRINTS | PR01217 | 9.6E-10 | 54 | 75 | No hit | No description |
PRINTS | PR01217 | 9.6E-10 | 80 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 5.7E-28 | 190 | 259 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-16 | 193 | 256 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.7E-34 | 193 | 258 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.2E-23 | 195 | 258 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.20E-35 | 269 | 382 | No hit | No description |
SuperFamily | SSF144074 | 3.14E-25 | 270 | 381 | No hit | No description |
Pfam | PF16421 | 2.7E-24 | 274 | 379 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHH APPPPGAHVH YFRAASPIPI 60 FRAAASSRPP RPPPPSTTTA PPPPAAPAVT PARPPPQQPA VAVAAPPPAT TTATATEEVA 120 APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKEC TTGAVKGIKR PRKPKGFKKG 180 DAGPSLFSPN NCRYDSSLGL LTKKFINLLE GAEDGTLDLN KAAETLEVQK RRIYDITNVL 240 EGVDLIEKTL KNMIRWKGFD MSKPKERERQ ISALKEEIES LYDEESRLDD EIMEAQEKLN 300 ALRVDEDRRK LLYVSKEDIN AIPRFQGSTL IAVNAPRGTY IEVPDPNLDM DIYKDLDNQE 360 KHYQIVFRSA MGPVDCFLIS NHQETFNADQ QMADNLDAAV TSGSSQAPQQ MDYVQASEIG 420 ESNGVREHTS EPSKRDDPVP GIVKIVPSDD IAADYWLSSD ADVSMTDTWG T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 7e-20 | 193 | 258 | 7 | 73 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR854994 | 0.0 | CR854994.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0127D24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633977.1 | 0.0 | transcription factor E2FC | ||||
TrEMBL | A0A0E0IQK1 | 0.0 | A0A0E0IQK1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G05260.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 8e-81 | E2F transcription factor 1 |