PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G04750.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 572aa    MW: 62322.1 Da    PI: 8.7426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G04750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-106495132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g WT+eEde l +av+ + g++Wk+I ++ +
  ONIVA10G04750.1 64 KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYN 95
                     688************************99876 PP
2Myb_DNA-binding45.22.2e-14111150848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ed++++d+vk++G+  W+ Ia+ ++ gR +kqc++rw+++l
  ONIVA10G04750.1 111 EDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 150
                      9************************.*************97 PP
3Myb_DNA-binding60.43.9e-19156199146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++
  ONIVA10G04750.1 156 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 199
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.50459102IPR017877Myb-like domain
SuperFamilySSF466898.61E-76095IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-86193IPR009057Homeodomain-like
SMARTSM007170.3363109IPR001005SANT/Myb domain
PfamPF002494.9E-86495IPR001005SANT/Myb domain
PROSITE profilePS5129414.777100150IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-23110158IPR009057Homeodomain-like
SMARTSM007179.7E-9110152IPR001005SANT/Myb domain
PfamPF002494.0E-13111150IPR001005SANT/Myb domain
CDDcd001671.02E-12111150No hitNo description
SuperFamilySSF466892.57E-29129211IPR009057Homeodomain-like
PROSITE profilePS5129428.34151205IPR017930Myb domain
SMARTSM007175.3E-18155203IPR001005SANT/Myb domain
PfamPF002495.9E-17156199IPR001005SANT/Myb domain
CDDcd001671.29E-14158201No hitNo description
Gene3DG3DSA:1.10.10.601.3E-22159204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAMVEQEGCV ENRQPLAASS SSVSDGSSYG GGGGGLAQMS PPVSSSANSI SGLRRTSGPI  60
RRAKGGWTPE EDETLRKAVE AYKGRNWKKI EQRYNACIDG KRFLILNLSK EDDQIIDLVK  120
KYGPTKWSVI AKALPGRIGK QCRERWHNHL NPEIRKDAWT TEEEQALINA HRIYGNKWAE  180
IAKVLPGRTD NSIKNHWNSS LRKKQDMYNT SNNMVVPKLL VHDKFKDKPK LMAMEGHLDL  240
NKAPIINSKD QPGTAHRSNC SGFLSRSSLP TAQPLTSREA SVVDGSAVTL VAQALESDSV  300
RGKGLEIDSV HEKGLEVNSA PDHTGNSWTI QLEAAPSKGE AELSLKNEAR SLGPLCYQIP  360
NMEDVVPVSS SLFSDHLTGN HTSEHCGDDI LSPAGCTTPP PTKGKLTSQL SVDSILKSAA  420
NSFPGTPSIL KRRKRDKSTP VSASEMKISG SNTDRFYTPM GMEPATATPE SFKTTSFLSL  480
GSLDGSVKSF DVSPQYRARS KRMALTKTVE KQLDFSSDGL DTCGSEILNS SCNNSQSTLS  540
ITEAPKLKEK EHAVQLENLT KNFAHTTNLD VT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-48632045158MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-48632045158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436RRKRDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402120.0FJ940212.1 Oryza sativa Japonica Group clone KCS635B12 Myb-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616493.10.0transcription factor MYB3R-2
RefseqXP_015616500.10.0transcription factor MYB3R-2
SwissprotQ0JHU70.0MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0IQE20.0A0A0E0IQE2_ORYNI; Uncharacterized protein
STRINGONIVA10G04750.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.29e-79myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]