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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G02660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 360aa MW: 38295.6 Da PI: 5.3443 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.4e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ ++ e++ C ++ lC C +e H H++vpl ONIVA10G02660.1 4 QCNACGAAEARVLCCADEAALCTACDEEVHAAnklagkHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 27.7 | 5.4e-09 | 63 | 95 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC+dC +++H ONIVA10G02660.1 63 VPKCDICQEASGFFFCLEDRALLCRDCDVSIHT 95 589*******9********************93 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.06E-8 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.7E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.6E-16 | 61 | 108 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.02E-9 | 64 | 108 | No hit | No description |
Pfam | PF00643 | 8.3E-7 | 64 | 95 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.617 | 66 | 108 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MKIQCNACGA AEARVLCCAD EAALCTACDE EVHAANKLAG KHQRVPLLSD GGAAPAAAAA 60 PAVPKCDICQ EASGFFFCLE DRALLCRDCD VSIHTVNSLV SVHQRFLLTG VQVGLDPADP 120 VPPVADKHVK SAGGSVDSAT KHLQRNPTDL SGENSASLPS QNVINGNYSR QSSATMAKTG 180 QVNWTMSNNT IRSIDPPPKY SSEESPALLL ASHTNTVAAY SNQISKDSDR IYNLPFTGGN 240 GSDSLHDWHV DEFFSNSEFG FAEHGSSKGD NAKPGSAGGS PQCRLAEGLF VEGLLGQVPD 300 NPWTVPEVPS PPTASGLYWQ NNLLCPSYDS TMFVPEISSL ENSQNNFTVS AGLKRRRRQF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001886 | 0.0 | AB001886.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R2931. | |||
GenBank | AK072231 | 0.0 | AK072231.1 Oryza sativa Japonica Group cDNA clone:J023001E21, full insert sequence. | |||
GenBank | AK104083 | 0.0 | AK104083.1 Oryza sativa Japonica Group cDNA clone:001-029-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644333.1 | 0.0 | B-box zinc finger protein 22 | ||||
TrEMBL | A0A0E0IPN8 | 0.0 | A0A0E0IPN8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G02660.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-55 | light-regulated zinc finger protein 1 |