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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G13330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 437aa MW: 45992.9 Da PI: 8.6682 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 102.3 | 4e-32 | 188 | 285 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +++r+ws+ De+v+L+Gli++++k+g+ +++di ++++++++++s+kvs++ql++K+rrLK+K+++ ++ak+gke +f +hd++i++l+k ONIVA09G13330.1 188 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPIPHDHNIYQLAK 280 678************************888899***************************************999999.9************** PP DUF573 94 kiWgs 98 k+Wg+ ONIVA09G13330.1 281 KVWGT 285 ***95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-26 | 190 | 284 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MAPKRPAEEA DAAAAAAGGS ASEGSDAEAS AEAARGHGSS PSPSKTPPPA NPNPKSAAAP 60 PSAVAAPASA AGSDSGAASD SPRAAGNPSG PRSIEVNSDS EDSALPLASD AYADQAAAAG 120 AGAGADSDDG NTSPLPPPRP SRAEAAAIKP ISSRPMDPPP RRSAGGSEPR AKRPRSAAVA 180 SSAEHSKRPS RVWSQADELV ILRGLITYRT KRGVLPGSTQ DIGKLHSYIR GQLSAKVSTT 240 QLSDKVRRLK QKYQMLATRA KTGKEVFPIP HDHNIYQLAK KVWGTMSTAG EGGGSGYDNA 300 DAGESEEEQY GRESDDDMES GRDNRHRKNQ RSVPVTMANG NGTGIGAVNA IVRGRSEFEK 360 GKDVYPYLWE TVEELSSQHP TGAVFKKAFE LLEGSKAQVM EEKLRKFRLT EMRQQLRRMD 420 LMKDTLSMVL DALEMAD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005393 | 0.0 | AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02. | |||
GenBank | AP005559 | 0.0 | AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611802.1 | 0.0 | STOREKEEPER protein | ||||
TrEMBL | A0A0E0IKT7 | 0.0 | A0A0E0IKT7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G13330.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2671 | 35 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 9e-15 | DNA-binding storekeeper protein-related transcriptional regulator |