PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G13330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 437aa    MW: 45992.9 Da    PI: 8.6682
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G13330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.34e-32188285298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+v+L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f  +hd++i++l+k
  ONIVA09G13330.1 188 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPIPHDHNIYQLAK 280
                      678************************888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  ONIVA09G13330.1 281 KVWGT 285
                      ***95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-26190284IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAPKRPAEEA DAAAAAAGGS ASEGSDAEAS AEAARGHGSS PSPSKTPPPA NPNPKSAAAP  60
PSAVAAPASA AGSDSGAASD SPRAAGNPSG PRSIEVNSDS EDSALPLASD AYADQAAAAG  120
AGAGADSDDG NTSPLPPPRP SRAEAAAIKP ISSRPMDPPP RRSAGGSEPR AKRPRSAAVA  180
SSAEHSKRPS RVWSQADELV ILRGLITYRT KRGVLPGSTQ DIGKLHSYIR GQLSAKVSTT  240
QLSDKVRRLK QKYQMLATRA KTGKEVFPIP HDHNIYQLAK KVWGTMSTAG EGGGSGYDNA  300
DAGESEEEQY GRESDDDMES GRDNRHRKNQ RSVPVTMANG NGTGIGAVNA IVRGRSEFEK  360
GKDVYPYLWE TVEELSSQHP TGAVFKKAFE LLEGSKAQVM EEKLRKFRLT EMRQQLRRMD  420
LMKDTLSMVL DALEMAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0E0IKT70.0A0A0E0IKT7_ORYNI; Uncharacterized protein
STRINGONIVA09G13330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.19e-15DNA-binding storekeeper protein-related transcriptional regulator