![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA09G10550.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 236aa MW: 24196.2 Da PI: 6.6691 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 27.9 | 7.3e-09 | 150 | 180 | 29 | 59 |
YABBY 29 tslfkvvtvrCGhCtsllsvnlakasqllaa 59 tslfk+v vrCGhC+sll+vn++ ++a ONIVA09G10550.2 150 TSLFKTVMVRCGHCSSLLTVNIRGLLLPTSA 180 89********************987765555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.0E-7 | 150 | 180 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MEPWRQGGAV GCGRRPAGEQ LGTGVGSTRR RRPHPQPLQF PPASATSVFA CHCRMVDPTS 60 RMRIRPARDG HIAAVVDASN GSESWAAASA EEHPSSRSDE QSEEADEDGD GNAEAVGAAV 120 LLFSPPPPAV AVATLLLFPS SDAGAAAAGT SLFKTVMVRC GHCSSLLTVN IRGLLLPTSA 180 AATVATAPPP PPPPPPPAAA HFPHSLNLAP PANPPHHHSL LDEISTASSP TQLLAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005420 | 0.0 | AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08. | |||
GenBank | AP005568 | 0.0 | AP005568.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1299_A11. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q8L556 | 7e-19 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A0E0IJS0 | 1e-165 | A0A0E0IJS0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G10550.2 | 1e-166 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18934 | 3 | 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|