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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 489aa MW: 54407.5 Da PI: 10.3299 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 30.8 | 8.2e-10 | 82 | 169 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 fqr ws +De+++L ++ ++++gk +++ ++++++ k + + l +K+r + ++ ++ k+ +++hd+ ++ls+ + ONIVA09G00040.1 82 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 167 9************************65..56789999999999865278899********9999998888......556899************ PP DUF573 96 Wg 97 W ONIVA09G00040.1 168 WV 169 *6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.8E-13 | 82 | 168 | IPR007592 | Protein of unknown function DUF573 |
Pfam | PF03017 | 1.8E-17 | 392 | 446 | IPR004264 | Transposase, Tnp1/En/Spm-like |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MAPTLPVVPA HGEDKKKKKK KKKKPSQEEE ALPLPLPLPP PDRKRKKASE PVNSPERAKK 60 KKKTATPHEP PSAKQQKRPL PFQRTWSPND EVLILEAMAA HRQEHGKVPT AAELFPVLNG 120 RLDRKRLTYK KLADKLRTFM RRHGRDAKNG PPTQAHDRRL YDLSRNVWVS QTQPPNLSAN 180 ANSNIAGGQP NQHDAMPTAG KAFVKMRDSY PNLTQALLLL VGTDLEKSLT AIDETKAQAL 240 DLKVSNLKKE LSEAVMESAT IQSTESSKIP CFPSTKLQPE FGAEIEKNFQ LEHLDEMKGA 300 QSQQMVDSKQ QQDKSSAKGI ICESSESGLR SIVADNNILC NTLQKEMVIQ QKLSCGKTKE 360 VTSKHRHPQK GELRRVTMHG QKEDTNNEGG KEVLLLSTTR PHIPVAKATL QTSSGSKFVG 420 GMPLGSEWYQ VFVNDVLKPE APLLRPPGMK MAEALKSIIA WPCAQVTDKA DFMSETKLYR 480 FAHYKGCGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 24 | DKKKKKKKKKKP |
2 | 14 | 23 | KKKKKKKKKK |
3 | 15 | 23 | KKKKKKKKK |
4 | 17 | 23 | KKKKKKK |
5 | 42 | 46 | RKRKK |
6 | 44 | 62 | RKKASEPVNSPERAKKKKK |
7 | 55 | 61 | ERAKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072386 | 0.0 | AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610933.1 | 0.0 | uncharacterized protein LOC4346364 isoform X1 | ||||
TrEMBL | A0A0E0IFZ0 | 0.0 | A0A0E0IFZ0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G00040.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13969 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-11 | DNA-binding storekeeper protein-related transcriptional regulator |