PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G24570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20092.1 Da    PI: 10.4238
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G24570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.8e-271766251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
  ONIVA08G24570.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
                     8***********************************************86 PP

2K-box17.12.3e-071211644285
            K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      ++++L++ eL+ Le+++ ++l+ +++k +  + + + ++ kk k
  ONIVA08G24570.1 121 NVNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEKKRK 164
                      5799********************99988777777777766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-35867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.291868IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-291091IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-281030IPR002100Transcription factor, MADS-box
CDDcd002651.61E-311378No hitNo description
PfamPF003192.8E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-283045IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-284566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR  60
LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRLRQK ERSDDPVPKI NHITQCVLES  120
NVNELNIAEL RGLEEAMTNA LTVVKNKLMM KVASVLPQSE KKRKSCSISE PRSGVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-171078369Myocyte-specific enhancer factor 2B
1tqe_Q1e-171078369Myocyte-specific enhancer factor 2B
1tqe_R1e-171078369Myocyte-specific enhancer factor 2B
1tqe_S1e-171078369Myocyte-specific enhancer factor 2B
6c9l_A1e-171078369Myocyte-specific enhancer factor 2B
6c9l_B1e-171078369Myocyte-specific enhancer factor 2B
6c9l_C1e-171078369Myocyte-specific enhancer factor 2B
6c9l_D1e-171078369Myocyte-specific enhancer factor 2B
6c9l_E1e-171078369Myocyte-specific enhancer factor 2B
6c9l_F1e-171078369Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RRRKRGKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429801e-160AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.11e-115MADS-box transcription factor 51-like isoform X2
TrEMBLA0A0E0IF051e-126A0A0E0IF05_ORYNI; Uncharacterized protein
STRINGONIVA08G24570.11e-126(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.32e-27MIKC_MADS family protein