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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G24550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 451aa MW: 46189.4 Da PI: 7.3168 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 112.8 | 2e-35 | 117 | 190 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+p v+vsg+e rfCqq fh l+efDe+krsCr+rL++hn+rrrk+q+ ONIVA08G24550.1 117 CAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQ---FHLLQEFDEAKRSCRKRLDGHNRRRRKPQP 190 *******************************************9...***************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-29 | 110 | 175 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.017 | 114 | 188 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-33 | 115 | 193 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-25 | 117 | 187 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG 60 LGEFGGGGAQ PRVAVAGELA KGKGPAAAAT GAAAAASSAP AKRPRGAAAG QQQCPSCAVD 120 GCKEDLSKCR DYHRRHKVCE AHSKTPLVVV SGREMRFCQQ FHLLQEFDEA KRSCRKRLDG 180 HNRRRRKPQP DPMNSASYLA SQQGARFSPF ATPRPEASWT GMIKTEESPY YTHHQIPLGI 240 SSRQQHFVGS TSDGGRRFPF LQEGEISFGT GAGAGGVPMD QAAAAAAASV CQPLLKTVAP 300 PPPPHGGGGS GGGKMFSDGG LTQVLDSDCA LSLLSAPANS TAIDVGGGRV VVQPTEHIPI 360 AQPLISGLQF GGGGGSSAWF AARPHHQAAT GATATAVVVS TAGFSCPVVE SEQLNTVLSS 420 NDNEMNYNGM FHVGGEGSSD GTSSSLPFSW Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-23 | 117 | 187 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 187 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109469 | 0.0 | AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649377.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 0.0 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A0E0IF01 | 0.0 | A0A0E0IF01_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G24550.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-38 | SBP family protein |