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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G14880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 456aa MW: 48716.5 Da PI: 4.3997 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.1 | 3.4e-39 | 87 | 185 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC++dC++apyfpa+q+++f n+h+lFG+sn+lk+l++l++e +dam++l+y+Ae+ra+dPv G+++vi +l++qle ael ONIVA08G14880.1 87 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAEL 180 7********************************************************************************************* PP DUF260 95 allke 99 +++ + ONIVA08G14880.1 181 NTVLH 185 98866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.017 | 86 | 187 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-37 | 87 | 183 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MTSTTTITTT NTTTTTNNNN NNPVSTTTTT TASHQRQSLP VAARPPHSSG SGSGSGGSHR 60 DASGGGSGGG GGGGGGGGGG GGGTNQACAA CKYQRRKCNP DCPMAPYFPA DQQRRFLNAH 120 RLFGVSNILK TLRHLKPELC DDAMRTLIYQ AEMRAHDPVG GCCRVICDLE RQLELDTAEL 180 NTVLHHLAMC RQAAAAGASG SVAATLPAGV LDDACADLDV TSSNQPLLLS AEHEVVDALY 240 ANQEADAAIL HADGHHNQEE SQREHHHGQP QQLYDYFYYD STAGDDVSSK PNLDINVDGM 300 QHFDFDTNYD AEHKVELTSD HQMPVGVDEH NQIDDKGFEI KSGPSLVDVF DLRQEEEQVQ 360 TVDVNTDIEV KEMVDMNADI DVKTMVDENS NIDIIKTMVD VNADIVDVVK TVVDVNGDIG 420 VKEELPELEN GKIIAGDATQ MAESSHCILG LGVSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 83 | 207 | 7 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 83 | 207 | 7 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 83 | SGGGGGGGGGGGGGGGGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005388 | 0.0 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883262.1 | 0.0 | uncharacterized protein LOC9266602 | ||||
TrEMBL | A0A0E0IBK6 | 0.0 | A0A0E0IBK6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G14880.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-37 | LOB domain-containing protein 22 |