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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G12870.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 265aa MW: 28963.8 Da PI: 8.6761 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.5 | 1.4e-30 | 6 | 93 | 1 | 78 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavg 78 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ + p +++ da+sslvyeA+ r+rdPvyG+vg ONIVA08G12870.4 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCVG 93 7*********************************************976555555555588899**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.646 | 5 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-30 | 6 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL 60 PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA 120 ARCSTAMATR TRRMTTQRKI LGYATGCHLP SPLVPRSAGP CSGFPSIVGS EGVLREGGAG 180 MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP SGEEQKGENK ANAFGKDEKP 240 TMESNQDKPA KRSIPWNIEK RELLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-33 | 2 | 93 | 7 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-33 | 2 | 93 | 7 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-114 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0IAU8 | 0.0 | A0A0E0IAU8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G12870.1 | 1e-137 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-43 | LBD family protein |