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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G03920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 143aa MW: 15722.1 Da PI: 4.1267 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 41.5 | 3.9e-13 | 21 | 67 | 54 | 100 |
DUF260 54 redamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + m+++vy A+ar++dP+ Ga+g ilklqqql++lkae a+++++ ONIVA08G03920.1 21 TVISMAAVVYLADARVEDPILGAYGRILKLQQQLDRLKAERARQHHP 67 5789**************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 8.5E-8 | 21 | 64 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MERILGFSEA EKQGIRPNGS TVISMAAVVY LADARVEDPI LGAYGRILKL QQQLDRLKAE 60 RARQHHPATS SPAPADDVAL QPEPFHQPPA QPSTPPALAI PDEEEEEDND DDEDEDEEEG 120 QEEGEGHAPA DDDVPCAKRR KHN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649522.1 | 8e-98 | LOB domain-containing protein 1 | ||||
TrEMBL | A0A0E0I7K8 | 1e-97 | A0A0E0I7K8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YRJ4 | 1e-97 | A2YRJ4_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA08G03920.1 | 2e-98 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16910 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 5e-06 | LOB domain-containing protein 4 |