![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA08G00920.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23574.2 Da PI: 6.9244 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.6 | 7.9e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+ ONIVA08G00920.2 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 31.9 | 5.4e-12 | 80 | 158 | 9 | 86 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 ++ + +qe+ Lk+ei+ Lq+ +R + G+ + ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e ONIVA08G00920.2 80 ACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANeHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 158 4455556679**********************998626************************************99765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-26 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.14E-39 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.691 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.4E-13 | 86 | 155 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT 60 GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRYIY GNRANEHMTV 120 EELNALERYL EIWMYNIRSA KEGMLKAANE ILQEKIVEQN GLIDVGMMVA DQQNGHFSTV 180 PLLEEITNPL TILSGYSTCR GSEMGYSF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 3e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 3e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 3e-15 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY115556 | 0.0 | AY115556.1 Oryza sativa (indica cultivar-group) MADS-box protein FDRMADS3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650791.1 | 1e-151 | MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-152 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-152 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0D3GVP9 | 1e-153 | A0A0D3GVP9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0I6J0 | 1e-153 | A0A0E0I6J0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QDJ4 | 1e-153 | A0A0E0QDJ4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A3BP02 | 1e-153 | A3BP02_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI08G00950.1 | 1e-154 | (Oryza rufipogon) | ||||
STRING | OBART08G00930.1 | 1e-154 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 5e-52 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|