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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G00920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 24974.8 Da PI: 7.9772 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.5 | 8.7e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rien rqvtf+kRr+g+lKKA ELS+LC+a++ +iifs +gkly+ ONIVA08G00920.1 10 RIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYD 56 8********************************************97 PP | |||||||
2 | K-box | 21 | 1.4e-08 | 88 | 170 | 17 | 86 |
K-box 17 lqqelakLkkeienLqreqRhllGedL.............esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +qe+ Lk+ei+ Lq+ +Rhl +++ e ++++eL+ Le+ Le + +iRs K+ +l++ e lq+k e ONIVA08G00920.1 88 PKQEAMVLKQEINLLQKGLRHLTLDKIkthgryiygnranEHMTVEELNALERYLEIWMYNIRSAKEGMLKAANEILQEKIVE 170 456666666666666655555544444111111133333357************************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.917 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-26 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.66E-38 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-22 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.339 | 85 | 187 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.9E-9 | 86 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSILCE ADIGIIIFSA HGKLYDLATT 60 GTMEELIERY KSASGEQANA CGDQRMDPKQ EAMVLKQEIN LLQKGLRHLT LDKIKTHGRY 120 IYGNRANEHM TVEELNALER YLEIWMYNIR SAKEGMLKAA NEILQEKIVE QNGLIDVGMM 180 VADQQNGHFS TVPLLEEITN PLTILSGYST CRGSEMGYSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 4e-15 | 1 | 70 | 1 | 69 | MEF2C |
6byy_A | 5e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB003326 | 1e-179 | AB003326.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:R3786. | |||
GenBank | AK069122 | 1e-179 | AK069122.1 Oryza sativa Japonica Group cDNA clone:J023004P21, full insert sequence. | |||
GenBank | AY115556 | 1e-179 | AY115556.1 Oryza sativa (indica cultivar-group) MADS-box protein FDRMADS3 mRNA, complete cds. | |||
GenBank | AY551925 | 1e-179 | AY551925.1 Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650791.1 | 1e-147 | MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-148 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-148 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0E0I6I9 | 1e-162 | A0A0E0I6I9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G00920.1 | 1e-163 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-48 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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