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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G17710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 128aa MW: 13248.9 Da PI: 5.6097 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 65.1 | 2.7e-20 | 12 | 128 | 6 | 134 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 e++ vqC+fC t+l+vsvP +s+++vv+v+CGhC+ +ls ++ ++a+ + l+ +el + +e++ + + + ONIVA07G17710.1 12 LRERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILS-AVNLPPSPVSASIE----LT---PQELDAGPPPGEYSDESSGDDR-EGR-- 94 5689999***********************************.33322222222222....22...2333333333332222222222.222.. PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfik 134 + ++d +p + +++PP ++qr Psayn+f+k ONIVA07G17710.1 95 --DAEDDAPAPAAAAvANKPPGRKQRTPSAYNCFVK 128 ..334444444444438*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-23 | 13 | 128 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MSSAARHHCS GLRERLGCVQ CSFCATVLLV SVPCSSVLRV VAVQCGHCSG ILSAVNLPPS 60 PVSASIELTP QELDAGPPPG EYSDESSGDD REGRDAEDDA PAPAAAAVAN KPPGRKQRTP 120 SAYNCFVK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274019 | 0.0 | AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882678.1 | 1e-88 | protein YABBY 7 isoform X3 | ||||
Swissprot | A2PZN8 | 2e-89 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | I1QEG0 | 5e-87 | I1QEG0_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0250200.1 | 9e-88 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-06 | YABBY family protein |