![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA07G13300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 994aa MW: 110661 Da PI: 7.5165 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 166.6 | 4.1e-52 | 95 | 210 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 e +rw +++ei+aiL+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdg+tv+E+hekLK+g+ e +++yYa++e++p+f ONIVA07G13300.1 95 AEaAARWFRPNEIYAILANHARFKIHAQPVDKPVSGTVVLYDRKVVRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDDPNFF 188 45589***************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylev 117 rrcywlL+++le+ivlvhy+++ ONIVA07G13300.1 189 RRCYWLLDKDLERIVLVHYRQT 210 *******************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.858 | 90 | 216 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.9E-63 | 93 | 211 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.5E-45 | 97 | 209 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 4.48E-10 | 439 | 525 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 3.58E-17 | 614 | 738 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.2E-17 | 623 | 738 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 8.42E-15 | 624 | 732 | No hit | No description |
PROSITE profile | PS50297 | 17.953 | 640 | 744 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.0E-7 | 646 | 736 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 9.6E-6 | 673 | 702 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.835 | 673 | 705 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 580 | 712 | 741 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 8.5E-9 | 789 | 890 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 6.54 | 824 | 850 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.5 | 839 | 861 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.785 | 840 | 867 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0022 | 842 | 860 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.016 | 862 | 884 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.274 | 863 | 887 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.01 | 865 | 884 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.4 | 945 | 967 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.084 | 947 | 975 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.047 | 948 | 967 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 994 aa Download sequence Send to blast |
MEQLKDLLHR SADAAKYAAT QPPPTPPLTG VSHNILTLLS PLHLQSSSLS SSARAAAAEA 60 EAAAMAGAGG WDPLVGSEIH GFLTYPDLNY EKLVAEAAAR WFRPNEIYAI LANHARFKIH 120 AQPVDKPVSG TVVLYDRKVV RNFRKDGHNW KKKKDGRTVQ EAHEKLKIGN EERVHVYYAR 180 GEDDPNFFRR CYWLLDKDLE RIVLVHYRQT AEENAMAPPN PEPEVADVPT VNLIHYTSPL 240 TSADSTSGHT ELSLPEEINS HGGISASSET GNHDSSLEEF WANLLESSIK NDPKVVTSAC 300 GGSFVSSQQI NNGPKNSGNI VNTSMASNAI PALNVVSETY ATNHGLNQVN ANHFGALKHQ 360 GDQTQSLLAS DVDSQSDQFI SSSVKSPMDG NTSIPNEVPA RQNSLGLWKY LDDDSPGLGD 420 NPSSVPQSFC PVTNERLLEI NEISPEWAYS TETTKVVVIG NFYEQYKHLA GSAMFGVFGD 480 QCVAGDIVQT GVYRFMVGPH TPGKVDFYLT LDGKTPISEI CSFTYHVMHG SSLEARLPPS 540 EDDYKRTNLQ MQMRLARLLF ATNKKKIAPK LLVEGTKVAN LMSALPEKEW MDLWNILSDP 600 EGTYVPVTES LLELVLRNRL QEWLVEMVME GHKSTGRDDL GQGAIHLCSF LGYTWAIRLF 660 SLSGFSLDFR DSSGWTALHW AAYHGRERMV ATLLSAGANP SLVTDPTPES PAGLTAADLA 720 ARQGYDGLAA YLAEKGLTAH FEAMSLSKDT EQSPSKTRLT KLQSEKFEHL SEQELCLKES 780 LAAYRNAADA ASNIQAALRE RTLKLQTKAI QLANPEIEAS EIVAAMKIQH AFRNYNRKKA 840 MRAAARIQSH FRTWKMRRNF INMRRQVIRI QAAYRGHQVR RQYRKVIWSV GIVEKAILRW 900 RKKRKGLRGI ASGMPVVMTV DAEAEPASTA EEDFFQAGRQ QAEDRFNRSV VRVQALFRSY 960 KAQQEYRRMK IAHEEAKDHN NNHCTTINVR NGFD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK070976 | 0.0 | AK070976.1 Oryza sativa Japonica Group cDNA clone:J023073E17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646432.1 | 0.0 | calmodulin-binding transcription activator CBT-like isoform X2 | ||||
Swissprot | Q7XHR2 | 0.0 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A0E0I0Z0 | 0.0 | A0A0E0I0Z0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G13300.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9831 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |