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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G11690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 269aa MW: 28001 Da PI: 4.4802 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.8 | 1.9e-23 | 180 | 224 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e ONIVA07G11690.1 180 EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVE 224 69************************************9998875 PP | |||||||
2 | QLQ | 54.3 | 4.2e-19 | 114 | 149 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k ONIVA07G11690.1 114 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 149 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 113 | 149 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.4E-12 | 114 | 148 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.922 | 114 | 149 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.302 | 180 | 224 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 181 | 219 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAAEGEAKKD SASNPPGGGG GGGGGEEEED SSLAVGEAAV GVGEAGGGGG GGEKADREEE 60 EGKEDVEEGG VCKDLVLVED AVPVEDPEEA AATAALQEEM KALVESVPVG AGAAFTAMQL 120 QELEQQSRVY QYMAARVPVP THLVFPIWKS VTGASSEGAQ KYPTLMGLAT LCLDFGKNPE 180 PEPGRCRRTD GKKWRCWRNA IANEKYCERH MHRGRKRPVQ LVVEDDEPDS TSGSKPASGK 240 ATEGGKKTDD KSSSSKKLAV AAPAAVEST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066400 | 0.0 | AK066400.1 Oryza sativa Japonica Group cDNA clone:J013062O07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644678.1 | 0.0 | growth-regulating factor 11 | ||||
Swissprot | Q6AWX8 | 0.0 | GRF11_ORYSJ; Growth-regulating factor 11 | ||||
TrEMBL | A0A0E0I0C2 | 0.0 | A0A0E0I0C2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YL38 | 0.0 | A2YL38_ORYSI; Uncharacterized protein | ||||
STRING | OS07T0467500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA07G11690.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6735 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-29 | growth-regulating factor 5 |
Publications ? help Back to Top | |||
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