PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA07G07540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 354aa    MW: 38540.5 Da    PI: 9.7657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA07G07540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-1294140148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W  eEde l + v+ +  + W+ Ia+ ++ gR +kqc++rw ++l
  ONIVA07G07540.1  94 KGGWIREEDEVLRQMVRYHRDRKWAEIAKSLP-GRIGKQCRERWTNHL 140
                      577999**************************.************996 PP
2Myb_DNA-binding55.71.1e-17146188145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g WT+eEd +l++a++ +G++ W++Iar ++ gR+++ +k+rw+
  ONIVA07G07540.1 146 KGIWTEEEDRKLIRAHQTYGNR-WSAIARSLP-GRSENTVKNRWN 188
                      678*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.31E-788132IPR009057Homeodomain-like
PROSITE profilePS5129423.97589144IPR017930Myb domain
SMARTSM007171.6E-1093142IPR001005SANT/Myb domain
PfamPF002491.6E-1194140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2296145IPR009057Homeodomain-like
CDDcd001671.22E-1197140No hitNo description
SuperFamilySSF466891.59E-28119197IPR009057Homeodomain-like
SMARTSM007171.6E-17145193IPR001005SANT/Myb domain
PROSITE profilePS5129418.274145195IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-23146192IPR009057Homeodomain-like
PfamPF002493.1E-16146188IPR001005SANT/Myb domain
CDDcd001675.93E-15149191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MATDRMPDSH FMASSNGGAC YQNTHGTPIT MGVPNLGCLV ASIGIAPSSS LMPERGLATA  60
NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWIRE EDEVLRQMVR YHRDRKWAEI  120
AKSLPGRIGK QCRERWTNHL HPDIKKGIWT EEEDRKLIRA HQTYGNRWSA IARSLPGRSE  180
NTVKNRWNAT KRSLNSKRRL RKKNSEQAVP RQPSLLEEYI RSCQHPLPNE TAPPASFDIG  240
GYGTGGTIGA NPTPPTVHAL GGSTPLGLVM FLDLLNQATP HPPQPDLNLL NITPVYGQLP  300
VQPHGISAQV GPSNVGTSGR TGGMDNNGVI QMASNQFVMP SEGGGIPDMA RWIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-37921965110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645903.11e-172transcription factor MYB119
TrEMBLA0A0E0HYP80.0A0A0E0HYP8_ORYNI; Uncharacterized protein
STRINGONIVA07G07540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-42myb domain protein 98