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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G07180.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 415aa MW: 46406.9 Da PI: 8.9759 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94 | 1.8e-29 | 100 | 189 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+ ONIVA07G07180.2 100 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 189 6*******************************************999.**********************9999***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-26 | 100 | 189 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50811 | 8.754 | 115 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGLPDTAHLQ VSNLVAAAAT EGKKKDTRRQ QESTSPRRAA PPVAAGDELA LAGATPQPYT 60 CNTAVEDSEA GPCIPRVQAA TGDYTPWLGQ EFASEHEAYE FYRYYAWKLG FSVRREYANK 120 SRKTGEITSR KFVCSREGFK APDKRTNHTR TPQPDTRTGC HANLVIRRKN DTSKYEVYAF 180 EAQHNHPLFI PSCANPLQRK LSDVQSSDAD NSGSEFKACI NDYEEEVELF TAWEAMISKY 240 NLHSNRRKKK GRNAKSQRKS CIEKGLQKTK KVQPEQSPIQ YTMLDATQPG NVLFQGLDIS 300 NPFPMGQLNY GGVQPQPGLC PSLPTVSREL GFAAYLSQPS SNSQHNQQKS TALLKVIVHI 360 CFNLQYNSWD KTGPVEDQIN FSNSYQSVIE ATKNSHLPGY IHQQHVHAML RSTTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627310.1 | 1e-102 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
Refseq | XP_015627311.1 | 1e-102 | protein FAR1-RELATED SEQUENCE 7 isoform X2 | ||||
TrEMBL | A0A0E0HYL3 | 0.0 | A0A0E0HYL3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G07180.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-21 | FAR1 family protein |