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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G07180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 431aa MW: 48124.8 Da PI: 9.2141 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.9 | 1.9e-29 | 116 | 205 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+ ONIVA07G07180.1 116 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 205 6*******************************************999.**********************9999***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-26 | 116 | 205 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50811 | 8.754 | 131 | 205 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MGLPDTAHLQ VSNLVAAAAT EGKKKDTRRQ QESTSPRRAA PPVAAGDELA LAGATPQPYT 60 CPSSSSARSL RWKESTGNTA VEDSEAGPCI PRVQAATGDY TPWLGQEFAS EHEAYEFYRY 120 YAWKLGFSVR REYANKSRKT GEITSRKFVC SREGFKAPDK RTNHTRTPQP DTRTGCHANL 180 VIRRKNDTSK YEVYAFEAQH NHPLFIPSCA NPLQRKLSDV QSSDADNSGS EFKACINDYE 240 EEVELFTAWE AMISKYNLHS NRRKKKGRNA KSQRKSCIEK GLQKTKKVQP EQSPIQYTML 300 DATQPGNVLF QGLDISNPFP MGQLNYGGVQ PQPGLCPSLP TVSRELGFAA YLSQPSSNSQ 360 HNQQKSTALL KVIVHICFNL QYNSWDKTGP VEDQINFSNS YQSVIEATKN SHLPGYIHQQ 420 HVHAMLRSTT S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627310.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
Refseq | XP_015627311.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 7 isoform X2 | ||||
TrEMBL | A0A0E0HYL2 | 0.0 | A0A0E0HYL2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G07180.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15895 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-21 | FAR1 family protein |