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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA07G02310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 23794.1 Da PI: 11.3355 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 109.8 | 5e-34 | 1 | 103 | 1 | 111 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 ++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h ++++++++++n+ s+++++++++t ONIVA07G02310.1 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH--------QVQNRGFQGNNFGSYDIASRNQRT 86 57999********************************************************9........99********************** PP YABBY 95 svsseklsenedeevpr 111 s++++ +++++++ + + ONIVA07G02310.1 87 STAMYPMPTSQQQPLRK 103 *******9999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-23 | 6 | 103 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60 DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQP LRKDSVSHLH TTDSSRRRYR 120 GLKPAILRLA TGRHSVLLQR TGLIFPGSIL ASALPTAAAA AAAATNRGGA ACRPATDRRR 180 ARRRAAAAGR ECARRRDDDD ILLSRVPLSL RRVIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 195 | RRRARRRAAAAGRECARRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274013 | 0.0 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. | |||
GenBank | AK070045 | 0.0 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. | |||
GenBank | CT828681 | 0.0 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. | |||
GenBank | CT828682 | 0.0 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. | |||
GenBank | CT828683 | 0.0 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. | |||
GenBank | CT832577 | 0.0 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. | |||
GenBank | FJ750932 | 0.0 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0HWV6 | 1e-155 | A0A0E0HWV6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA07G02310.1 | 1e-156 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-16 | YABBY family protein |