PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G29860.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 309aa    MW: 32028.8 Da    PI: 4.9316
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G29860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +  +++   C  ++  lC  C    H+       H++ pl
  ONIVA06G29860.1  4 QCDVCAAEPAAVLCCADEAALCSACDRRVHRAnrlaskHRRLPL 47
                     7*****************************76889999988775 PP
2zf-B_box26.41.4e-0863104338
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                      ++ C+ + ek+   fC +++  lC+dC + +H+       Ht
  ONIVA06G29860.1  63 APLCDVCREKRGLVFCVEDRAILCADCDEPIHSAndltakHT 104
                      579*****************************6577777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
SMARTSM003366.9E-8147IPR000315B-box-type zinc finger
CDDcd000211.26E-5347No hitNo description
PfamPF006434.2E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.55661108IPR000315B-box-type zinc finger
SMARTSM003366.2E-1761108IPR000315B-box-type zinc finger
CDDcd000212.66E-764108No hitNo description
PfamPF006435.7E-664105IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRVQCDVCAA EPAAVLCCAD EAALCSACDR RVHRANRLAS KHRRLPLVHP SSSSSGDGGA  60
AAAPLCDVCR EKRGLVFCVE DRAILCADCD EPIHSANDLT AKHTRFLLVG AKLSPAALAE  120
QPLPSSDCSS DDDAAAAATE EEYHSSAAST GAAVSAPLDA SSNGAGGGGG VGGSSISDYL  180
TTICPGWRVE DLLPDDDAFA AAAAAQAGKE KDERVPFLDA DLFDVVAGRP EKKGGSWAPH  240
VPHLPAWCLD EVPVVVAASA APAATPVKAK QGHVRDNHWS DSDAFAVPEF SPPPPPAKRA  300
RPSSQFWCF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8316150.0CT831615.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110A13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641371.11e-150B-box zinc finger protein 20 isoform X2
TrEMBLA0A0E0HVC10.0A0A0E0HVC1_ORYNI; Uncharacterized protein
STRINGONIVA06G29860.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-39salt tolerance homolog2