PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G29610.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 310aa MW: 34281.6 Da PI: 7.0428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G29610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.8	8.8e-24	102	198	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++ + k+rr+r r gC a+ +v+k++ +w+vtk++ +H ONIVA06G29610.1 102 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHHV 195 6****************************************99999999999999999**************99************ PP FAR1 87 Hel 89 H++ ONIVA06G29610.1 196 HPV 198 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	102	198	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGPPCEAQSL LSLFGRFLLP LERIPFPFRS TPTPALLHSR GRELRGVGGM EGHRHGEADD 60 EEEELGLRLG LASAGASAAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR AGFAVRTDKS 120 RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC MAMCEVTKKE 180 PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA TEPSDEPTGA 240 PAAARWDYVI HKYNLEENTW LQSLYDTRQQ WAWVYQKGSF FPELLKSQRS ERLNNCTEAL 300 NSTKASSTSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	0.0	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641723.1	1e-111	protein FAR1-RELATED SEQUENCE 9
TrEMBL	A0A0E0HV83	0.0	A0A0E0HV83_ORYNI; Uncharacterized protein
STRING	ONIVA06G29610.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP53443	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-13	FAR1 family protein