PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G28780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 1812aa    MW: 204410 Da    PI: 6.8332
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G28780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.81.9e-15257293135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg+
  ONIVA06G28780.1 257 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 293
                      ****977777***********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.975121156IPR010399Tify domain
SMARTSM009795.9E-11121156IPR010399Tify domain
PfamPF062002.8E-12124155IPR010399Tify domain
PROSITE profilePS5101713.404182224IPR010402CCT domain
PfamPF062036.1E-15182224IPR010402CCT domain
SMARTSM004011.5E-11251304IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091251299IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-11255313No hitNo description
Gene3DG3DSA:3.30.50.108.8E-15256298IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.54E-13256306No hitNo description
PfamPF003206.1E-13257292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257284IPR000679Zinc finger, GATA-type
PfamPF120661.6E-16409490IPR021933Protein of unknown function DUF3546
PfamPF049591.4E-34641828IPR007042Arsenite-resistance protein 2
PROSITE patternPS000280710733IPR007087Zinc finger, C2H2
CDDcd147988.87E-99571023No hitNo description
SuperFamilySSF525401.12E-6010531326IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-7610701352IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.5E-1110741240IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003647.3E-1810851100No hitNo description
PRINTSPR003647.3E-1811641178No hitNo description
PRINTSPR003647.3E-1812601274No hitNo description
SuperFamilySSF520581.53E-3613911763IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.0E-2514621730IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003647.3E-1814881504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1812 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG  60
AEEEDEEEED ELEEEEEEME EDEDAQHHEG VGGEVAVPMD AEAAAQLDPH GGMLAASGAV  120
QPMASNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGLGSGASSS APYSKRLNFP  180
HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKGDE ATSELTASDG  240
SPNWGSVEGR PPSAAECHHC GINAKATPMM RRGPDGPRTL CNACGLMWAN KGMLRDLSKA  300
PPTPIQVVAS VNDGNGSAAA PTTEQEIPAP ATVNGHESST YGYDHERGGG RGGYDDDRYH  360
GRYQNRAAGE DSSPRAKFRF DLRNWADSGF GASNDGPGIT QREGLMTYKQ FIQVLEDDIS  420
PAEAEKRYQE YRTEYITTQK RAYFDLNKND DRLKDKYHPT NLSSVIDRRN DSCKATAKDF  480
FHDLQNGTLD LGPGITAAAA SGSDGNSDDD GDSDKRRKHG RGSSKETDPL SGAPVAHPVS  540
SESRRVQVDI EQALALVHKL DTEKGIVGNI LSSGDHDKSD VDKSHIGSMG PIIIIRGLTT  600
VKGLEGVELL DTLLTYLWRI HGVDYYGMSE TNEAKGSRHV RADNKMSNTT NINAADWEKK  660
VDTFWQERLR GQDPMVILAA KDKIDAAAVE VLEPYVRKIR DEKYGWKYGC GAKGCTKLFH  720
APEFVHKHLR LKHPELVLEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA PDKSRQRPGM  780
DNRLRYDRAN RREYDRAERD GSRYGRGDRS PSLDGADDQM FDAFRGRGPN APFVPELPAP  840
PILMPIPGAG PLGPFVPAPP EIAMHMLREQ GPPPPFEPNG PPHANPGVLG PMMGGPAPII  900
TMPPSFRQDP RRLRRKVAFS LGEGALVKLG TEVVEAASVL TYFEHSMKQI ESEFTIMRAF  960
ISQVRDVAHD VEDIVDEYAY LAAQAIDTGT FFKRKFQQTK NVAAWQNISR QISQVETRIQ  1020
RLSAMRNRYG ISIDEKSSSN MSQYPRQLSV SDSAYLTDDT EIVGNASVTR RLTQWVLEER  1080
QDRSVMSTFG MGGVGKTTIA SSIFKNQQFM MAFACNAWIT LSQSYEIEDL LRQISKQLMD  1140
QQVYLASNVE AMNRIKLIEE LQIYLKRRKY LIVLDDVWDK DVWLFLNYAF VRNNLGGRVL  1200
ITTRKKDVAF LADHNCVVEL EALPHTEAWH LFCKKAFRRL EDKMCPENLR PWAEKIVTKC  1260
QGLPLAIVAI GSLLSYREFE EQEWKLFYNQ LGWQLANNPE LNWIANILNL SLNDLPSYLR  1320
SCFLYCSLFP EDCRIKRKMH VELWIAEGLV EERGDGTTME EVARCYLTEL TQRSLLAVIE  1380
RNACGRARTF RMHDLVREMA SIIAKKERLA FSYDNVGITQ VAHEYRRLWI QKDAQSLRYL  1440
GGSKLRSFVL LDIGEPSSWI YDALSRFRLL RVLCLRFANI EQVPGVVTEL YNLHYLDLSH  1500
TKVKHIPASF KNLINLQFLD IRSSYVEELP LEITLLTNLR HLYAYVIHDL QERSLDCISA  1560
TKIPGNICHL KNLQALQTVS ANKDLVSQLG NLTRMRSLCV MKALSNLKVF WLAGKLEGGV  1620
LPPMFAKLEK ITELKLDWSG LKKDHIESFS YMLNLVVLVL TGAYDGERLN FHAKWFPKLN  1680
LLQLADMEHL NRIEIEDGSM MCLRELDLVG LRNLNEVPKG IRYIRTLHEM IITDMPKEFI  1740
VKIQGSDRYI VQHVPNIHIF ESSDFQAVNN FIRLPHLTKR QFIVDFPHRP NGTVPYVSRA  1800
KCTIRLNYTW KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ax1_A1e-1514047541351Serrate RNA effector molecule
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0HUV90.0A0A0E0HUV9_ORYNI; Uncharacterized protein
STRINGONIVA06G28780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.28e-68ZIM-LIKE 2