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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G28780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 1812aa MW: 204410 Da PI: 6.8332 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.8 | 1.9e-15 | 257 | 293 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg Tp++Rrgpdg++tLCnaCGl+++ kg+ ONIVA06G28780.1 257 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 293 ****977777***********************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.975 | 121 | 156 | IPR010399 | Tify domain |
SMART | SM00979 | 5.9E-11 | 121 | 156 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.8E-12 | 124 | 155 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.404 | 182 | 224 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.1E-15 | 182 | 224 | IPR010402 | CCT domain |
SMART | SM00401 | 1.5E-11 | 251 | 304 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.091 | 251 | 299 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-11 | 255 | 313 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.8E-15 | 256 | 298 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 9.54E-13 | 256 | 306 | No hit | No description |
Pfam | PF00320 | 6.1E-13 | 257 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 257 | 284 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF12066 | 1.6E-16 | 409 | 490 | IPR021933 | Protein of unknown function DUF3546 |
Pfam | PF04959 | 1.4E-34 | 641 | 828 | IPR007042 | Arsenite-resistance protein 2 |
PROSITE pattern | PS00028 | 0 | 710 | 733 | IPR007087 | Zinc finger, C2H2 |
CDD | cd14798 | 8.87E-9 | 957 | 1023 | No hit | No description |
SuperFamily | SSF52540 | 1.12E-60 | 1053 | 1326 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.4E-76 | 1070 | 1352 | IPR002182 | NB-ARC |
Gene3D | G3DSA:3.40.50.300 | 1.5E-11 | 1074 | 1240 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 7.3E-18 | 1085 | 1100 | No hit | No description |
PRINTS | PR00364 | 7.3E-18 | 1164 | 1178 | No hit | No description |
PRINTS | PR00364 | 7.3E-18 | 1260 | 1274 | No hit | No description |
SuperFamily | SSF52058 | 1.53E-36 | 1391 | 1763 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.0E-25 | 1462 | 1730 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 7.3E-18 | 1488 | 1504 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1812 aa Download sequence Send to blast |
MSHHDGSKPY QPRRGPERPP PPAPADDAAA HVAPTVDHLA AVAAEAEAMA RFEEEHRALG 60 AEEEDEEEED ELEEEEEEME EDEDAQHHEG VGGEVAVPMD AEAAAQLDPH GGMLAASGAV 120 QPMASNQLTL SFQGEVYVFD SVSPDKVQAV LLLLGGRELN PGLGSGASSS APYSKRLNFP 180 HRVASLMRFR EKRKERNFDK KIRYSVRKEV ALRMQRNRGQ FTSSKPKGDE ATSELTASDG 240 SPNWGSVEGR PPSAAECHHC GINAKATPMM RRGPDGPRTL CNACGLMWAN KGMLRDLSKA 300 PPTPIQVVAS VNDGNGSAAA PTTEQEIPAP ATVNGHESST YGYDHERGGG RGGYDDDRYH 360 GRYQNRAAGE DSSPRAKFRF DLRNWADSGF GASNDGPGIT QREGLMTYKQ FIQVLEDDIS 420 PAEAEKRYQE YRTEYITTQK RAYFDLNKND DRLKDKYHPT NLSSVIDRRN DSCKATAKDF 480 FHDLQNGTLD LGPGITAAAA SGSDGNSDDD GDSDKRRKHG RGSSKETDPL SGAPVAHPVS 540 SESRRVQVDI EQALALVHKL DTEKGIVGNI LSSGDHDKSD VDKSHIGSMG PIIIIRGLTT 600 VKGLEGVELL DTLLTYLWRI HGVDYYGMSE TNEAKGSRHV RADNKMSNTT NINAADWEKK 660 VDTFWQERLR GQDPMVILAA KDKIDAAAVE VLEPYVRKIR DEKYGWKYGC GAKGCTKLFH 720 APEFVHKHLR LKHPELVLEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA PDKSRQRPGM 780 DNRLRYDRAN RREYDRAERD GSRYGRGDRS PSLDGADDQM FDAFRGRGPN APFVPELPAP 840 PILMPIPGAG PLGPFVPAPP EIAMHMLREQ GPPPPFEPNG PPHANPGVLG PMMGGPAPII 900 TMPPSFRQDP RRLRRKVAFS LGEGALVKLG TEVVEAASVL TYFEHSMKQI ESEFTIMRAF 960 ISQVRDVAHD VEDIVDEYAY LAAQAIDTGT FFKRKFQQTK NVAAWQNISR QISQVETRIQ 1020 RLSAMRNRYG ISIDEKSSSN MSQYPRQLSV SDSAYLTDDT EIVGNASVTR RLTQWVLEER 1080 QDRSVMSTFG MGGVGKTTIA SSIFKNQQFM MAFACNAWIT LSQSYEIEDL LRQISKQLMD 1140 QQVYLASNVE AMNRIKLIEE LQIYLKRRKY LIVLDDVWDK DVWLFLNYAF VRNNLGGRVL 1200 ITTRKKDVAF LADHNCVVEL EALPHTEAWH LFCKKAFRRL EDKMCPENLR PWAEKIVTKC 1260 QGLPLAIVAI GSLLSYREFE EQEWKLFYNQ LGWQLANNPE LNWIANILNL SLNDLPSYLR 1320 SCFLYCSLFP EDCRIKRKMH VELWIAEGLV EERGDGTTME EVARCYLTEL TQRSLLAVIE 1380 RNACGRARTF RMHDLVREMA SIIAKKERLA FSYDNVGITQ VAHEYRRLWI QKDAQSLRYL 1440 GGSKLRSFVL LDIGEPSSWI YDALSRFRLL RVLCLRFANI EQVPGVVTEL YNLHYLDLSH 1500 TKVKHIPASF KNLINLQFLD IRSSYVEELP LEITLLTNLR HLYAYVIHDL QERSLDCISA 1560 TKIPGNICHL KNLQALQTVS ANKDLVSQLG NLTRMRSLCV MKALSNLKVF WLAGKLEGGV 1620 LPPMFAKLEK ITELKLDWSG LKKDHIESFS YMLNLVVLVL TGAYDGERLN FHAKWFPKLN 1680 LLQLADMEHL NRIEIEDGSM MCLRELDLVG LRNLNEVPKG IRYIRTLHEM IITDMPKEFI 1740 VKIQGSDRYI VQHVPNIHIF ESSDFQAVNN FIRLPHLTKR QFIVDFPHRP NGTVPYVSRA 1800 KCTIRLNYTW KF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ax1_A | 1e-151 | 404 | 754 | 1 | 351 | Serrate RNA effector molecule |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0HUV9 | 0.0 | A0A0E0HUV9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G28780.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1734 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 8e-68 | ZIM-LIKE 2 |