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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G26720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARR-B | ||||||||
Protein Properties | Length: 694aa MW: 76607.7 Da PI: 5.8795 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 79.6 | 3.7e-25 | 186 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r++WtpeLH+ Fv av++L G ++A+P++il++mkv+ +t+e+++SHLQkYRl ONIVA06G26720.1 186 RQRVVWTPELHRDFVIAVHEL-GVDRAVPRKILRMMKVDYMTRENIASHLQKYRL 239 58*******************.********************************8 PP | |||||||
2 | Response_reg | 63.4 | 1.2e-21 | 18 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ ++ll+ +l++ +y + + ++d+ al++l+e+ +Dl++ D+ m +mdG++ll+ i e +lp+i+ +a+ge e++ + + ONIVA06G26720.1 18 VLAVDDSPVCLMLLEALLRRCKY-QPTMTRDAATALRMLRERPgdFDLVISDVHMLDMDGFKLLELIGLEM-DLPVIMQSANGELETMMKGVTH 109 799********************.9999***********988888**********************6644.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l+Kp++ +++ + ONIVA06G26720.1 110 GACDYLVKPVSLKDIQN 126 ***********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 4.13E-32 | 14 | 137 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-36 | 15 | 164 | No hit | No description |
SMART | SM00448 | 1.1E-24 | 16 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.048 | 17 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.2E-19 | 18 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.44E-22 | 19 | 131 | No hit | No description |
SuperFamily | SSF46689 | 3.76E-18 | 183 | 243 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.269 | 183 | 242 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 185 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-23 | 187 | 239 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MAATQATATR KFPEGLRVLA VDDSPVCLML LEALLRRCKY QPTMTRDAAT ALRMLRERPG 60 DFDLVISDVH MLDMDGFKLL ELIGLEMDLP VIMQSANGEL ETMMKGVTHG ACDYLVKPVS 120 LKDIQNIWQH VWRKRKLDIR NHNGGYNDGG ELVGATRTKR KYTRKMRNDG DNYGENKENM 180 DSTLKRQRVV WTPELHRDFV IAVHELGVDR AVPRKILRMM KVDYMTRENI ASHLQKYRLY 240 LKRISTQTGM DPDQFPEKWK YINELDALKN YCENGRYRLT PAIASSSSSN PFARMNSASA 300 LATNGFLPTH SVQLKNSQRN MAMGTVGHGG SPGNNPVFQP LQNSSNARKC FPSGPSGSSF 360 ANISNGLVLD TDDSGSSYAG MFCKSMWETS NGSPSCHSGN SCANKSNNGV SAPANQFQVQ 420 SKCGFSAPAN QFPVQSNCGF SAPANQYQVQ SNGGFSVPAN QFPVQSNGEF LAPTNQFPVQ 480 YPEVNNQPLV QMNQSSTNHF STIGNDYQFP DLANCSKYWQ PTAPSMFPDL GHNDGTSFRP 540 SQANIANINQ LSSFAASSGQ EPMFGDELHG QMSPIMSTIS LSDFDDQMGS FNIGNDTSPA 600 EMMHDNFSLG SDSNISSSTP TDSSFGSTFP DFHLDSPEMP AQMLNGGDED GILLPVLDDT 660 VDQQDLFDQL DENNGREKLG SGRCVRKGLF ECFF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-20 | 185 | 245 | 4 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882103.1 | 0.0 | two-component response regulator ORR25 | ||||
Swissprot | Q67W50 | 0.0 | ORR25_ORYSJ; Two-component response regulator ORR25 | ||||
TrEMBL | A0A0E0HU61 | 0.0 | A0A0E0HU61_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G26720.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13504 | 21 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 5e-79 | response regulator 12 |