PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G15740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 22083.6 Da PI: 4.7603 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78 | 6.8e-25 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ + ONIVA06G15740.1 19 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 66 8*******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-31 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.745 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.14E-31 | 11 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.45E-25 | 11 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-21 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-24 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-21 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-21 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVRSRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA 60 GNVFAFGQPT VDAVVRLFDP LHADGADPAP AAVEDGGGGG DDVVVADPEE LDALRRAEEQ 120 TKAQVAAEQA RMRDVGDKVT QAMAGRPLWW EADVEALGEA ELPALERLRD SVHRHASTLA 180 STATPLPPPP EQEEVPELDV SDYSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003951 | 0.0 | AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642334.1 | 1e-99 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0E0HQ67 | 1e-144 | A0A0E0HQ67_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G15740.1 | 1e-145 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2833 | 30 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.3 | 8e-14 | MIKC_MADS family protein |