PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G11490.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 536aa    MW: 60496.6 Da    PI: 11.7741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G11490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-143984348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd  l ++  + G+++W+++a+ m+ +R++ qc++rw+++l
  ONIVA06G11490.1 39 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPVQCRDRWRDHL 84
                     6*****************************99***********986 PP
2Myb_DNA-binding43.57.3e-14431479348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+e+d  l ++  ++G+++W+++a+ m+    +R++ qc++rw+++l
  ONIVA06G11490.1 431 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 479
                      7*********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9153288IPR017930Myb domain
SMARTSM007176.2E-123686IPR001005SANT/Myb domain
SuperFamilySSF466897.4E-1938134IPR009057Homeodomain-like
PfamPF002491.1E-133984IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-163996IPR009057Homeodomain-like
CDDcd001673.37E-113984No hitNo description
SMARTSM007170.02489140IPR001005SANT/Myb domain
CDDcd001673.77E-492137No hitNo description
PROSITE profilePS500907.13192138IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-697136IPR009057Homeodomain-like
PROSITE profilePS5129416.738424483IPR017930Myb domain
SMARTSM007171.9E-8428481IPR001005SANT/Myb domain
PfamPF002495.2E-13431479IPR001005SANT/Myb domain
CDDcd001676.34E-9431479No hitNo description
SuperFamilySSF466891.07E-15431503IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-15431496IPR009057Homeodomain-like
SMARTSM0071750484522IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAMMEPSSSS SSTASAVTPS SAPPSGRCCV VLRIKLPAAW TPEEDAALER LAVENGSRHW  60
RRVAAQMPRK RSPVQCRDRW RDHLARDVFH RPYTAADDDE LTRLVLRPGG GGDRWNDISR  120
AVHGRSSRSV KRRWMEIGTS DELLRKLWHP RSSMLSPATV VDAFPLSLSH PISHYSHFFY  180
RPEQALAAAV PANSSAPSAG NHPPQMRVVR EHMLPPTSLI SGHQSPSAPP PSPLYLFGKN  240
RNRRGRNEGR RRKRKRKRKA DRWAHEHLNL YLLFEYFRLF PKYPLATKKP PVGTLRLPWG  300
HSRFTIPDVG PPAKPKPKVE VLLLAPHASM RIVVGASLFP RPPQHAAQLV FGLCVILAAL  360
PPLTVVGSLF YFGWQPVVFQ GSDNQVAYLG FIRVGARQLS SSSSAASVFA SSSATSPPLG  420
RCVVRIRLPP AWTPELDAVL ERLAMEHGSR HWRRVAAQMP RHSSRRSPAQ CRDRWRDHLA  480
RDVFHRPFTA DDDAELARLC LRLDDGRSSR AVKRRWRELR KSDAFLGKLW RRPLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A6e-13311371106MYB21
3osf_D6e-13311371106MYB21
3osg_A6e-13311371106MYB21
3osg_D6e-13311371106MYB21
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RRKRKR
2250256RRKRKRK
3250258RRKRKRKRK
4252258KRKRKRK
5253258RKRKRK
6509514RAVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642266.12e-89transcription factor MYB44
TrEMBLA0A0E0HNN80.0A0A0E0HNN8_ORYNI; Uncharacterized protein
STRINGONIVA06G11490.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-15myb domain protein r1