PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G08220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 297aa    MW: 31677.7 Da    PI: 10.9036
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G08220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57345.52.2e-1497184698
           DUF573   6 lwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                      +w++ De++lL + + f+a++g  p   d+ a++e +++sis+++ +  +  K++r K Kf +   +       + +++hd+ +  ls  +Wgs
  ONIVA06G08220.1  97 VWNDADEVALLTAAVAFRARNGFAPRLpDMGALFESLRGSISSHIDQAKVYYKLKRNKSKFLHAPPQ------ATTTTPHDRRVRALSAELWGS 184
                      8**********************98877**********************************99998......8899***************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-1397183IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSSSRRPPAR AAATEAAADA GLPLHPSSPR SKKHSSSSRR AAAGDRRPAA RAPNPSLSPR  60
GGGGGAPSRK SERRRRPRSL ALAVHGHAST SGGPGLVWND ADEVALLTAA VAFRARNGFA  120
PRLPDMGALF ESLRGSISSH IDQAKVYYKL KRNKSKFLHA PPQATTTTPH DRRVRALSAE  180
LWGSELAPPA VEGDADAAEA ADERDAEEGY IGGNLHVSVR LPVVSEVLGD YWRKNGRVLS  240
GVSLERGLAL VGPEEGRMAE AKWKRQLEVE TQTQGRRHDL AKEVCAMLID AVRGLGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047580.0AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCT8305130.0CT830513.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA036D18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641305.11e-162formin-like protein 5
TrEMBLA0A0E0HML10.0A0A0E0HML1_ORYNI; Uncharacterized protein
STRINGONIVA06G08220.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.13e-10DNA-binding storekeeper protein-related transcriptional regulator