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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G08220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 297aa MW: 31677.7 Da PI: 10.9036 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 45.5 | 2.2e-14 | 97 | 184 | 6 | 98 |
DUF573 6 lwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +w++ De++lL + + f+a++g p d+ a++e +++sis+++ + + K++r K Kf + + + +++hd+ + ls +Wgs ONIVA06G08220.1 97 VWNDADEVALLTAAVAFRARNGFAPRLpDMGALFESLRGSISSHIDQAKVYYKLKRNKSKFLHAPPQ------ATTTTPHDRRVRALSAELWGS 184 8**********************98877**********************************99998......8899***************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.4E-13 | 97 | 183 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MSSSRRPPAR AAATEAAADA GLPLHPSSPR SKKHSSSSRR AAAGDRRPAA RAPNPSLSPR 60 GGGGGAPSRK SERRRRPRSL ALAVHGHAST SGGPGLVWND ADEVALLTAA VAFRARNGFA 120 PRLPDMGALF ESLRGSISSH IDQAKVYYKL KRNKSKFLHA PPQATTTTPH DRRVRALSAE 180 LWGSELAPPA VEGDADAAEA ADERDAEEGY IGGNLHVSVR LPVVSEVLGD YWRKNGRVLS 240 GVSLERGLAL VGPEEGRMAE AKWKRQLEVE TQTQGRRHDL AKEVCAMLID AVRGLGP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004758 | 0.0 | AP004758.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0664C05. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT830513 | 0.0 | CT830513.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA036D18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641305.1 | 1e-162 | formin-like protein 5 | ||||
TrEMBL | A0A0E0HML1 | 0.0 | A0A0E0HML1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G08220.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00250.1 | 3e-10 | DNA-binding storekeeper protein-related transcriptional regulator |