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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G07790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 500aa MW: 53296.3 Da PI: 8.6867 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.8 | 4.5e-24 | 86 | 129 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++ +k+CE+H+hrg++rsrk++e ONIVA06G07790.1 86 DPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 129 79***************************************997 PP | |||||||
2 | WRC | 24.5 | 4.7e-08 | 310 | 329 | 25 | 44 |
WRC 25 kklCErHlhrgrsrsrkske 44 +k+CE+H+hrg++rsrk++e ONIVA06G07790.1 310 SKYCEKHMHRGKNRSRKPVE 329 79***************997 PP | |||||||
3 | QLQ | 61.7 | 2e-21 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+aa++PvPp+Ll++++ ONIVA06G07790.1 10 LFTATQWQELEHQALIYKYMAAGAPVPPDLLLHLR 44 5******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.4E-10 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.039 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.7E-15 | 11 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.714 | 86 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-19 | 87 | 129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MAGGGSGRCL FTATQWQELE HQALIYKYMA AGAPVPPDLL LHLRHRAAAA AAADVDTVPS 60 LAFPPHHLGW GCYGAAAAQY GRRVEDPEPG RCRRTDGKKW RCSREAYGES KYCEKHMHRG 120 KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA GAGAPLQLHL DSFHASTSPP 180 PSYHITPLFP VSGGYGWSSS KEHCLTLGGV ADLSLNKPAD HHHHDATSAT TTEKPLRDDG 240 RTLWDSTQLS ISIPTAAASS PDLAIASAAS RYHNNVTHGA VGQSGQDAWR RLTSRMGSPN 300 GLGGRRRPLS KYCEKHMHRG KNRSRKPVEM PPPAAAAVYR PSALSISPPP HDADAPSYGA 360 GAGAPLQLHL DSFHASTSPP PSYHRYAHTS SAPLFPSSAA GYGGGWSLSK EHCLTLGGAA 420 ADLSLDKPAD HHHDATSATT EKPLRRFFDE WPRSDDGRTP WDGTQLSISI PTAVAASPDL 480 AIAGAASRYH SNGDHLRTSE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836198 | 0.0 | CT836198.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA059E01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641768.1 | 1e-160 | growth-regulating factor 2 | ||||
Swissprot | Q6AWY7 | 1e-161 | GRF2_ORYSJ; Growth-regulating factor 2 | ||||
TrEMBL | A0A0E0HMF4 | 0.0 | A0A0E0HMF4_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G07790.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13992 | 25 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-40 | growth-regulating factor 5 |