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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G05610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 697aa MW: 78240.9 Da PI: 9.309 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.3 | 2.2e-22 | 214 | 300 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la ONIVA06G05610.1 214 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPTHNHQLA 300 7********************9*******************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-20 | 214 | 300 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MIRVNPQPST NVAGGLDFEI GRGARPIWAG FHWAECIEGP PVRRVHVRVS KTRCTQPRSG 60 APPDLPWTGS IVSAVDRRQP SPPHVAGLRR GRRSVVGKRR ASSVPRLPPP LTPSSSWLGP 120 DLRWGSAATA PRLAPPPPPA SPPRRYSGLR HLPLRALLRE MDSSRDSEEE RPQRKDNGEE 180 TENGEDGGNA LSLKDVANEL LGCVVHSEEE AYKLYCDYGH RIGFSVRKGK QSYFIGTKNI 240 RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV DEKGRWTVIR FVPTHNHQLA 300 KPGERHMLRS AKSLAVGKSG VIDPQASTES HPINGFSHMI GSDIVEPPGY TIRDCYNHVS 360 MQGITIIEAG DSQSLVNYFK RRTNEEGMFY WDVQVDQEGR MTNFFFRDAK SRNDFDCFGD 420 ACMQGPNSET ELEESWATML NEYKLQENSW LSDLYRSRNK WCSAFNKDTF DGGINSSQWG 480 EVSNNTFTGI SDESTPLTRF ALLLEKVFKG LRRNESEEDF RCSQTAPVRA IKHSTVLKQA 540 AESYTHKIYK LFEAEFLDGC GATSCHEREK ALDVFFEIRS LRSQAAKDVS KRDKKKKKSS 600 KGPSTKKAKP TPATSSAVPE LLAQTNVHQF QSAQDAQGNT TIGRPLYYQA FSSAPMQPNQ 660 IYMHPNMHTM PLCAPQQDFS AYSAMRPNSN FGGAKNV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 0.0 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AP002536 | 0.0 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643627.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_015643629.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A0E0HLM6 | 0.0 | A0A0E0HLM6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G05610.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-21 | FAR1-related sequence 5 |