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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA06G05110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | E2F/DP | ||||||||
Protein Properties | Length: 419aa MW: 46239.4 Da PI: 9.517 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.9 | 3.6e-23 | 54 | 119 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f++l+++ + + + l+++a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g ONIVA06G05110.1 54 RKQKSLGLLCSNFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRKAKNRYSWIG 119 79*****************999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 75.9 | 4.1e-24 | 177 | 257 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e ++++k+RR+YDi+NVL++ln i+k ++k+++rw g ONIVA06G05110.1 177 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 257 79********************************************************************99*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-25 | 50 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.79E-16 | 53 | 118 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.4E-29 | 54 | 119 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-20 | 55 | 119 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.2E-22 | 174 | 258 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.2E-30 | 177 | 257 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.8E-19 | 178 | 257 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.62E-12 | 179 | 257 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MATAAVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG 60 LLCSNFVALY NRDDVESIGL DDAARRLGVE RRRIYDIVNV LESVGILVRK AKNRYSWIGF 120 GGVPMALREL KMSDDEDEDK MGDADGDTES EKLSQPVDNP SDNKPGAPRC RLRSDHRKEK 180 SLGLLTQNFV KLFLTMEVDT ISLDEAAKLL LGEGHAENSM RTKVRRLYDI ANVLSSLNFI 240 DKIQQADSRK PAFRWLGSAG KPKAENGVTI AVPPPGKTIS NKRAFGTELT NIDINRSRLD 300 STIPKKAKLT QSGGEILKNC KLSVQKQLGQ GSKGGFVYGP FHPAGARKQE LDNGNKGHTD 360 NVQNWESLAA SFRPQYQNQA LGDLFAHYVE AWKSWYSEFA QGSSMMQQHF GMPVINQFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 7e-37 | 53 | 249 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111537 | 0.0 | AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626334.1 | 0.0 | E2F transcription factor-like E2FE | ||||
Swissprot | Q8LSZ4 | 1e-101 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A0E0HLF9 | 0.0 | A0A0E0HLF9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA06G05110.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-102 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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