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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G29020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 279aa MW: 28291.1 Da PI: 7.4509 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.9 | 3.9e-20 | 154 | 188 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++ ONIVA05G29020.1 154 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 188 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.0E-20 | 148 | 200 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-13 | 151 | 189 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.1E-17 | 152 | 188 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.916 | 152 | 184 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.82E-14 | 153 | 185 | No hit | No description |
Pfam | PF00320 | 7.8E-18 | 154 | 188 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 154 | 179 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPMSNGQ CWPPSTVEES AAYDDHSTVT 60 TSPSSPSSSS TGSVDCTLSL GTPSSRRAEP VAAAAPAANH GAPVPAHYPS LSAATVSWDA 120 TAESYYCGQQ GRPATGAAKC AAGAGHDALL DRRCANCGTA STPLWRNGPR GPKSLCNACG 180 IRYKKEERRA AATTTTADGA AGCGFITAQR GRGSTAAKAA PAVTTCGEET SPYVVGGGGG 240 GGEVANAAYL AWRLNVVPPA ATATAFSVWP ERASLYHYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073464 | 0.0 | AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence. | |||
GenBank | AK101287 | 0.0 | AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence. | |||
GenBank | DQ784546 | 0.0 | DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638999.1 | 0.0 | GATA transcription factor 15 | ||||
Swissprot | Q6L5E5 | 0.0 | GAT15_ORYSJ; GATA transcription factor 15 | ||||
TrEMBL | A0A0E0HIY1 | 0.0 | A0A0E0HIY1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G29020.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 4e-23 | GATA transcription factor 19 |
Publications ? help Back to Top | |||
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