PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G21800.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 402aa    MW: 46147.5 Da    PI: 5.0265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G21800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-164390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l +++k++G ++Wk++ +   + R++k+c++rw ++l
  ONIVA05G21800.1 43 KGPWTSWEDSILEKYIKKHGERNWKLVQKNTRLLRCGKSCRLRWMNHL 90
                     79******************************99************97 PP
2Myb_DNA-binding49.21.2e-1596139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++
  ONIVA05G21800.1  96 KGAFSKEEENKIINLHRKMGNK-WSRMAADLP-GRTDNEIKNYWNT 139
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9623890IPR017930Myb domain
SuperFamilySSF466895.08E-2641137IPR009057Homeodomain-like
SMARTSM007174.3E-134292IPR001005SANT/Myb domain
PfamPF002497.1E-144390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-204497IPR009057Homeodomain-like
CDDcd001676.00E-114590No hitNo description
PROSITE profilePS5129423.15891145IPR017930Myb domain
SMARTSM007172.6E-1595143IPR001005SANT/Myb domain
PfamPF002491.8E-1496139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2598143IPR009057Homeodomain-like
CDDcd001675.18E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MHESDSDPDS DRTHWYMSNS DDESFVDKDK DCRRSTVAPL LKKGPWTSWE DSILEKYIKK  60
HGERNWKLVQ KNTRLLRCGK SCRLRWMNHL RPNLKKGAFS KEEENKIINL HRKMGNKWSR  120
MAADLPGRTD NEIKNYWNTR IKKCKNNRSP LYPANVCNDA LNEDQHESAD PNVREKLTNN  180
QLEDTTSMYF APQFSDASIS NILDRRLASK DYDSIEDQRN QIEVVAKYEI PLPVLKTTNN  240
DIFPSASIFA NHGISNGNLS ALSTTDALQM ELPLIQFDPN NQFVYSRAYA THLTNFALLN  300
DQSEELLNDT DVLNYVVMKE ELSGGSLSPT INMPCEAHNS MAASNELVVP RYEGDAPPLQ  360
DDFTSYFYLN DTNLSIFEDT NELFLENKLD TKGELVMACY VS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28391433106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886210.0D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881555.10.0transcription factor GAMYB
SwissprotA2WW877e-79GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A0E0HG720.0A0A0E0HG72_ORYNI; Uncharacterized protein
STRINGONIVA05G21800.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154081018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-58myb domain protein 33