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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G16770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 839aa MW: 91891.3 Da PI: 6.1924 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 111.7 | 4.4e-35 | 168 | 242 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gCead+ e+k yhrrh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k ONIVA05G16770.1 168 CQVPGCEADIRELKGYHRRHRVCLRCAHATAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 242 ************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.9E-27 | 162 | 229 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.504 | 165 | 242 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-33 | 166 | 245 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-27 | 168 | 242 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence Send to blast |
MDAPGGGGGG GGGVDAGEPV WDWGNLLDFA VHDDDSLVLP WGDDSIGIEA DPAEAALLPP 60 APSPQPAEAE AEAAGPASLP SSMQAEGSKR RVRKRDPRLV CPNYLAGRVP CACPEIDEMA 120 AALEVEDVAT ELLAGARKKP KGAGRGSGAA VGGSGGGASR GTPAEMKCQV PGCEADIREL 180 KGYHRRHRVC LRCAHATAVM LDGVQKRYCQ QCGKFHILLD FDEDKRSCRR KLERHNKRRR 240 RKPDSKGILE KDIDDQLDFS ADGSGDGELR EENIDVTTSE TLETVLSNKV LDRETPVGSD 300 DVLSSPTCAQ PSLQIDQSKS LVTFAASVEA CLGTKQENTK LTNSPVHDTK STYSSSCPTG 360 RVSFKLYDWN PAEFPRRLRH QIFEWLSSMP VELEGYIRPG CTILTVFVAM PQHMWDKLSE 420 DTGNLVKSLV NAPNSLLLGK GAFFIHVNNM IFQVLKDGAT LTSTRLEVQS PRIHYVHPSW 480 FEAGKPIDLI LCGSSLDQPK FRSLVSFDGL YLKHDCRRIL SHETFDCIGS GEHILDSQHE 540 IFRINITTSK LDTHGPAFVE VENMFGLSNF VPILVGSKHL CSELEQIHDA LCGSSDISSD 600 PCELRGLRQT AMLGFLIDIG WLIRKPSIDE FQNLLSLANI QRWICMMKFL IQNDFINVLE 660 IIVNSLDNII GSELLSNLEK GRLENHVTEF LGYVSEARNI VDNRPKYDKQ RQVDTRWAGD 720 YAPNQPKLGI SVPLAESTGT SGEHDLHTTN AASGEEENMP LVTKALPHRQ CCHPETSARW 780 LNAASIGAFP GGAMRMRLAT TVVIGAVVCF AACVVLFHPH RVGVLAAPVK RYLSRNYSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 3e-37 | 167 | 247 | 5 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 242 | KRSCRRKLERHNKRRRRKP |
2 | 228 | 240 | RRKLERHNKRRRR |
3 | 235 | 242 | NKRRRRKP |
4 | 236 | 241 | KRRRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100057 | 0.0 | AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640052.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q6I576 | 0.0 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A0E0HEC0 | 0.0 | A0A0E0HEC0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G16770.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 1e-144 | squamosa promoter binding protein-like 7 |
Publications ? help Back to Top | |||
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