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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G07450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 435aa MW: 45865.2 Da PI: 6.8976 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.4 | 4.4e-06 | 98 | 136 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +e e++ C ++ lC+ C +H H ONIVA05G07450.1 98 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 136 7******99*********************544555555 PP | |||||||
2 | zf-B_box | 30.8 | 6.2e-10 | 162 | 202 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e ++ +fC +++ llC++C ++ H H ONIVA05G07450.1 162 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 202 789******99*******************99545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.196 | 94 | 141 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.3E-10 | 94 | 141 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.47E-5 | 98 | 129 | No hit | No description |
SuperFamily | SSF57845 | 8.7E-5 | 157 | 200 | No hit | No description |
SMART | SM00336 | 1.4E-15 | 160 | 207 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-8 | 162 | 194 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.41E-9 | 164 | 207 | No hit | No description |
PROSITE profile | PS50119 | 9.542 | 165 | 207 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MVGSAFEFAI LRRISPQKKK QFVRPLGVET SANGSRRRRP TSTAPTNPFH SILHRPPPMS 60 PPPPPYYHHL LLLRSSPTTT GGGARVLAAA ELARMKLLCS ACEAAEASVL CCADEAALCA 120 RCDRDIHAAN RLAGKHLRLP LLSPASSSSS SAAALAPPPP SPPKCDICQE SHAYFFCLED 180 RALLCRSCDV AVHTANAFVS AHRRFLLTGV QVGQEQDEHS PDPPEPSPPP PPPPPASKSD 240 HPAPLYGEGG GGFSWDAADS PAAGGLPDWS AVDDQFGSPP PPRHTDTATV TTPPPTKRSP 300 RAPAFGGQGG MMDWPLGEFF GGFTDFTGGF GFGFGDSGTS KADSGKLGGS TDGSPYYRSS 360 SEDDRNADEL FGQVPEIQWS VPELPSPPTA SGLHWQRHPA ATHGGGGGPD TTAFVPDICS 420 PDSCFPATTS KRRRQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 38 | KKKQFVRPLGVETSANGSRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106865 | 0.0 | AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638101.1 | 0.0 | B-box zinc finger protein 22 | ||||
TrEMBL | A0A0E0HAY0 | 0.0 | A0A0E0HAY0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G07450.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-42 | light-regulated zinc finger protein 1 |