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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G07370.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 429aa MW: 48292.2 Da PI: 5.8111 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.5 | 5.6e-31 | 51 | 101 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+ ONIVA05G07370.4 51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101 79***********************************************95 PP | |||||||
2 | SRF-TF | 82.5 | 2.6e-26 | 307 | 355 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ie++ rqvtf+kR ng+lKKA+ELS LCdaeva+i+fss+g+lyeys+ ONIVA05G07370.4 307 IEDTADRQVTFCKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSN 355 99*********************************************95 PP | |||||||
3 | K-box | 103.9 | 2e-34 | 119 | 215 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 s+ + + e +a+++qqe+akLk++i nLq+ +R l+G++++s++++eL+qLe +L+k+l kiR++Knell+++ie++q++e elq++n++L++k ONIVA05G07370.4 119 SNASTVVEINAQHYQQEAAKLKQQITNLQNANRTLVGDNITSMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSK 212 3344488999************************************************************************************ PP K-box 98 lee 100 ++e ONIVA05G07370.4 213 VAE 215 986 PP | |||||||
4 | K-box | 15.5 | 7.2e-07 | 383 | 413 | 68 | 98 |
K-box 68 kKnellleqieelqkkekelqeenkaLrkkl 98 +ne+++++ie++q++e elq++n++ ++++ ONIVA05G07370.4 383 AQNEYMCAEIEYMQRRETELQNDNMYSKSEM 413 589*********************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-39 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.422 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.03E-44 | 45 | 117 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-32 | 45 | 115 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-32 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 45 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-26 | 52 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-32 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-32 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-26 | 128 | 213 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.685 | 129 | 219 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS50066 | 25.385 | 297 | 357 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-24 | 297 | 356 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.03E-25 | 306 | 370 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.33E-32 | 307 | 371 | No hit | No description |
Pfam | PF00319 | 1.1E-23 | 307 | 353 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ 60 VTFCKRRNGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVKETIER YKKANSDTSN 120 ASTVVEINAQ HYQQEAAKLK QQITNLQNAN RTLVGDNITS MNHRELKQLE GRLDKGLGKI 180 RARKNELLCA EIEYMQRRET ELQNDNMYLK SKVAESERGL QTVNMMGSAS TSEYVQNMIH 240 YDPRNFLQFN IMHQPQYYPE QEDRKAFMSA IMHIYKEQEA EPSTGLMMPE PAPAASPGSG 300 SSEGSGIEDT ADRQVTFCKR CNGLLKKAYE LSMLCDAEVA LIVFSSRGRL YEYSNNSVEE 360 TIERYKKANS DTSNASTVAE INAQNEYMCA EIEYMQRRET ELQNDNMYSK SEMKDKYGSV 420 SCMCFLQGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 2e-18 | 45 | 369 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-18 | 45 | 369 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-18 | 45 | 369 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-18 | 45 | 369 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB232157 | 0.0 | AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds. | |||
GenBank | FJ750942 | 0.0 | FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638060.1 | 0.0 | MADS-box transcription factor 58 isoform X1 | ||||
Swissprot | Q2V0P1 | 0.0 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A0E0HAW9 | 0.0 | A0A0E0HAW9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G07370.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-92 | MIKC_MADS family protein |