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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA05G04240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 133aa MW: 14161.5 Da PI: 8.0439 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 27.6 | 4e-09 | 32 | 51 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ Cg+t+Tp+WR gp g++ ONIVA05G04240.1 32 CVECGATTTPMWRGGPTGPR 51 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.262 | 26 | 49 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-5 | 28 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.0E-6 | 29 | 49 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.9E-6 | 32 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MGSSDQKVIG IAAAAAAAAA AAAAEEAGRR CCVECGATTT PMWRGGPTGP RISEIVISRS 60 ESDCEGTMEG NCVPLKRIFY YHLLGLQKAA NVLLFLVPIR VLTMENNSCD ILHIIRIIGR 120 GCGIESKTRI IDR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087551 | 7e-79 | AC087551.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0431G05, complete sequence. | |||
GenBank | AP014961 | 7e-79 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0H9T7 | 1e-91 | A0A0E0H9T7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G04240.1 | 2e-92 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26124 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 4e-08 | GATA transcription factor 23 |