PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G02220.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 311aa    MW: 34017.1 Da    PI: 5.9504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G02220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-193077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  ONIVA05G02220.1 30 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding51.13.2e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  ONIVA05G02220.1  83 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1992577IPR017930Myb domain
SuperFamilySSF466894.12E-3128124IPR009057Homeodomain-like
SMARTSM007171.5E-152979IPR001005SANT/Myb domain
PfamPF002496.3E-173077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-233184IPR009057Homeodomain-like
CDDcd001678.39E-123277No hitNo description
PROSITE profilePS5129422.52778132IPR017930Myb domain
SMARTSM007174.2E-1482130IPR001005SANT/Myb domain
PfamPF002491.3E-1483126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2285131IPR009057Homeodomain-like
CDDcd001671.96E-1087126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEMMRMAMSP AMSSATAAAA ASEDEGDLRR GPWTVEEDML LVDYIANHGE GRWNSLARCA  60
GLRRTGKSCR LRWLNYLRPD VRRGNITADE QLLILDLHSR WGNRWSKIAQ YLPGRTDNEI  120
KNYWRTRVQK HAKQLRCDVN SKEFRDVVRH VWMPRLVERI QADAAAAGEV AAPAPVSAAA  180
TRSMSSPAGA MYLHHQQIPL AAGAMVVAPA VSSEAYHHHG CGGGGDTSCS EPSQAAVTMS  240
PDDASSTLRS SSAAAENDTI HGDVLSGSWS ELLATTTTTI AATAGLPDFD ELGDFEDNLW  300
SLEDIWLHQQ C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252712424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1182880.0AC118288.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0077L08, complete sequence.
GenBankAK2436590.0AK243659.1 Oryza sativa Japonica Group cDNA, clone: J100089B08, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638460.10.0transcription factor MYB2-like
TrEMBLA0A0E0H9100.0A0A0E0H910_ORYNI; Uncharacterized protein
STRINGONIVA05G02220.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-80myb domain protein 78