PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G28760.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 397aa    MW: 42044.2 Da    PI: 6.9253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G28760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  ONIVA04G28760.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding46.77.4e-1567144147
                      TSSS-HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg................................tWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE++l+++++ +lG++                                +W+ Ia+ ++ gRt++++k++w++y
  ONIVA04G28760.1  67 RGTFSQEEEDLIIQLHSMLGNKyvlysssthicqslsrsvpsltmaaatatalaRWSQIAAQLP-GRTDNEVKNFWNSY 144
                      899*************************************************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-27564IPR009057Homeodomain-like
PROSITE profilePS5129425.33965IPR017930Myb domain
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
SuperFamilySSF466897.7E-231465IPR009057Homeodomain-like
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001671.51E-111761No hitNo description
SuperFamilySSF466891.1E-55193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-226587IPR009057Homeodomain-like
PROSITE profilePS5129410.22266149IPR017930Myb domain
SMARTSM007173.4E-1266147IPR001005SANT/Myb domain
PfamPF002491.2E-1267144IPR001005SANT/Myb domain
CDDcd001673.61E-769145No hitNo description
SuperFamilySSF466897.7E-23117146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-22121149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGTF SQEEEDLIIQ LHSMLGNKYV LYSSSTHICQ SLSRSVPSLT MAAATATALA  120
RWSQIAAQLP GRTDNEVKNF WNSYIKKKLR DRGIDPATHK PLAADSSATP TNTTAAAASR  180
STATCRAVFS DAELQIPTAA AVQQQQQAPL VGAMQLVDGI KMPLDDYWPA AAAAAAPSSS  240
TTTFSAYHHA LSMQQQAAAG CGGAAAFDMD ALSHCGVVVA PSASSSSTLT SMAGLSPAAA  300
DAAEQSANVA AAAATTTNLP WLDLGHANPI ATMDHYAGVL DELRWSDYFD GAYQAATTAT  360
QGGALQGQCL YDGGGGGGKD VDDAVQFVDV HSLSNWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251114924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0872200.0AC087220.9 Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879543.10.0transcription factor MYB4
SwissprotQ8VZQ26e-71MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A0E0H7Q70.0A0A0E0H7Q7_ORYNI; Uncharacterized protein
STRINGONIVA04G28760.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.13e-69myb domain protein 50
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]