PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G28640.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 378aa    MW: 40009.5 Da    PI: 6.1877
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G28640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.6e-3583182297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+++ +f+a++g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+
  ONIVA04G28640.1  83 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 176
                      79*************************9977778***************************************999****************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  ONIVA04G28640.1 177 ARGIWR 182
                      *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-3084181IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLPTVVDDPS AAAAAAAVGA AASSSFPDAD VYGNGDSDDI DFPSDPNHAT TQAFSSAAAA  60
AAAAGPGGGG GAGSGSGGER RPLFQRLWTE EDEIVILRAF AEFTAQRGTA FASHQYDTDP  120
FYEDMRRRLQ LDFSKSQLVE KLRRLKRKYR NCVDRLRATG QSFSFRSPHE QAIFEIARGI  180
WRPTSDKHGR DADSDDDALP DAAAAVAVPA PANGEVRSPS STRAQQRRGR RRRTAAAAAA  240
TATAADASEP PQPYPPAPAP APVKAEDALP HFFPQGAAVT ATAHVHGVDP ASAAASAAAN  300
AEGGILAPLF KEMVRAMLTA GMAPPSLEPP APGIPMKGER WRQQRILELE VYLRRIDLLQ  360
DQVRTALEEL KSTPPATQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0826440.0AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBankAK2432080.0AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCT8377480.0CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632846.10.0probable transcription factor At3g04930
TrEMBLA0A0E0H7P50.0A0A0E0H7P5_ORYNI; Uncharacterized protein
STRINGONIVA04G28640.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-33DNA-binding storekeeper protein-related transcriptional regulator