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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G25940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 236aa MW: 25783.5 Da PI: 9.7874 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 91 | 150 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++++eq+++Le l++ r+p+ ++e+++++l +++ ++V++WFqN++a+e++ ONIVA04G25940.1 91 TRWNPSAEQIKVLEMLYRGgMRTPNSVQIERITEELgkygRIEGKNVFYWFQNHKARERQ 150 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.9 | 1.9e-37 | 90 | 152 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+P++eQik+Le+ly+ G+rtPn+ +i+rit+eL +yG+ie+kNVfyWFQN+kaRerqkq ONIVA04G25940.1 90 TTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQ 152 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.928 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-6 | 88 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.21E-12 | 90 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.72E-5 | 91 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-7 | 91 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.7E-17 | 91 | 150 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MRLHHLHVAY LDHKASSSSS SPAPPSISPS SIPGSAAFPA FSFKCLRPLA PKISLPEPRK 60 MIAPPDFVVP RARNASKLLN YTVQVPAAGT TRWNPSAEQI KVLEMLYRGG MRTPNSVQIE 120 RITEELGKYG RIEGKNVFYW FQNHKARERQ KQKRAALLTL STLDPSLLPA TANETKEAPE 180 KKEKDVEDGL ASCKRRCKAW GDGAGDGDAV VATEAAGGCT DEVTLELFPL HPQGKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF836159 | 0.0 | JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635367.1 | 1e-176 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q25AM2 | 1e-177 | WOX4_ORYSI; WUSCHEL-related homeobox 4 | ||||
Swissprot | Q7XTV3 | 1e-177 | WOX4_ORYSJ; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A0D3G0Z2 | 1e-174 | A0A0D3G0Z2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H6P1 | 1e-174 | A0A0E0H6P1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PEX6 | 1e-174 | A0A0E0PEX6_ORYRU; Uncharacterized protein | ||||
TrEMBL | F6MIV6 | 1e-174 | F6MIV6_ORYSJ; WUSCHEL-like homeobox protein | ||||
TrEMBL | I1PQB1 | 1e-174 | I1PQB1_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI04G29140.1 | 1e-175 | (Oryza rufipogon) | ||||
STRING | ONIVA04G25940.1 | 1e-175 | (Oryza nivara) | ||||
STRING | ORGLA04G0238000.1 | 1e-175 | (Oryza glaberrima) | ||||
STRING | OBART04G27560.1 | 1e-175 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 9e-38 | WUSCHEL related homeobox 4 |