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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G21940.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 302aa MW: 34263.3 Da PI: 9.2385 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ ONIVA04G21940.4 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 101.6 | 1.1e-33 | 79 | 172 | 5 | 98 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+++l+ +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++k+ ONIVA04G21940.4 79 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKV 172 334488899**********************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.571 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.07E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-32 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.1E-31 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.069 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA 60 GINKTLEKYN SCCYNAQGSN SALAGGEHQS WYQEMSRLKT KLECLQRSQR HMLGEDLGPL 120 SIKELQQLEK QLEYSLSQAR QRKTQIMMEQ VDDLRRKERQ LGELNKQLKN KVLLIVSTIN 180 FCLSIWWIGN TVQPLLCFLV LISVSSNFVM SFRHVVLTHR HTIQLEAEAD SSNCRSAIQD 240 SWVHGTVVSG GRVLNAQPPP DIDCEPTLQI GYYQFVRPEA ANPRSNGGGG DQNNNFVMGW 300 PL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 5e-21 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_B | 5e-21 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_C | 5e-21 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_D | 5e-21 | 2 | 71 | 1 | 70 | Myocyte-specific enhancer factor 2A |
5f28_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF109153 | 0.0 | AF109153.1 Oryza sativa MADS box transcription factor MADS17 (MADS17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634419.1 | 1e-165 | MADS-box transcription factor 17-like | ||||
Swissprot | Q7XUN2 | 1e-166 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A0E0H521 | 0.0 | A0A0E0H521_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA04G21940.4 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-81 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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