PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G21940.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28183.9 Da    PI: 9.1772
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G21940.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.4e-32958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  ONIVA04G21940.3  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                     79**********************************************95 PP
2K-box103.13.6e-3479173599
            K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s+++l+  +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++kl
  ONIVA04G21940.3  79 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172
                      334488899************************************************************************************9 PP

            K-box  99 e 99 
                      e
  ONIVA04G21940.3 173 E 173
                      7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002658.50E-44277No hitNo description
SuperFamilySSF554551.31E-32276IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-33323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-3187172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.61388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GINKTLEKYN SCCYNAQGSN SALAGGEHQS WYQEMSRLKT KLECLQRSQR HMLGEDLGPL  120
SIKELQQLEK QLEYSLSQAR QRKTQIMMEQ VDDLRRKERQ LGELNKQLKN KLEAEADSSN  180
CRSAIQDSWV HGTVVSGGRV LNAQPPPDID CEPTLQIGYY QFVRPEAANP RSNGGGGDQN  240
NNFVMGWPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22169169MEF2C
5f28_B2e-22169169MEF2C
5f28_C2e-22169169MEF2C
5f28_D2e-22169169MEF2C
6byy_A2e-22170170MEF2 CHIMERA
6byy_B2e-22170170MEF2 CHIMERA
6byy_C2e-22170170MEF2 CHIMERA
6byy_D2e-22170170MEF2 CHIMERA
6bz1_A3e-22170170MEF2 CHIMERA
6bz1_B3e-22170170MEF2 CHIMERA
6bz1_C3e-22170170MEF2 CHIMERA
6bz1_D3e-22170170MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1091530.0AF109153.1 Oryza sativa MADS box transcription factor MADS17 (MADS17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634419.10.0MADS-box transcription factor 17-like
SwissprotQ7XUN20.0MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A0D3FZB80.0A0A0D3FZB8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZPN60.0A0A0D9ZPN6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H5180.0A0A0E0H518_ORYNI; Uncharacterized protein
TrEMBLA0A0E0H5190.0A0A0E0H519_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PD480.0A0A0E0PD48_ORYRU; Uncharacterized protein
TrEMBLQ0JAS40.0Q0JAS4_ORYSJ; MADS17
STRINGOGLUM04G22680.10.0(Oryza glumipatula)
STRINGORUFI04G24470.10.0(Oryza rufipogon)
STRINGOS04T0580700-010.0(Oryza sativa)
STRINGOBART04G22790.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.16e-92AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]