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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G21940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28802.6 Da PI: 8.9745 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.6e-32 | 14 | 63 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ ONIVA04G21940.1 14 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 63 79**********************************************95 PP | |||||||
2 | K-box | 103 | 3.8e-34 | 84 | 178 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s+++l+ +++s++qe+++Lk ++e Lqr+qRh+lGedL++Ls+keLqqLe+qLe sl++ R++K+++++eq+++l++ke++l e nk+L++kl ONIVA04G21940.1 84 SNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 177 334488899************************************************************************************9 PP K-box 99 e 99 e ONIVA04G21940.1 178 E 178 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.571 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-41 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-32 | 7 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-43 | 7 | 82 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 8 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-33 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-27 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-33 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-33 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.1E-31 | 92 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.613 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDRSEMGRGR VELKRIENKI NRQVTFSKRR NGLLKKAYEL SVLCDAEVAL IIFSSRGKLY 60 EFGSAGINKT LEKYNSCCYN AQGSNSALAG GEHQSWYQEM SRLKTKLECL QRSQRHMLGE 120 DLGPLSIKEL QQLEKQLEYS LSQARQRKTQ IMMEQVDDLR RKERQLGELN KQLKNKLEAE 180 ADSSNCRSAI QDSWVHGTVV SGGRVLNAQP PPDIDCEPTL QIGYYQFVRP EAANPRSNGG 240 GGDQNNNFVM GWPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-22 | 6 | 74 | 1 | 69 | MEF2C |
5f28_B | 3e-22 | 6 | 74 | 1 | 69 | MEF2C |
5f28_C | 3e-22 | 6 | 74 | 1 | 69 | MEF2C |
5f28_D | 3e-22 | 6 | 74 | 1 | 69 | MEF2C |
6byy_A | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6byy_B | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6byy_C | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6byy_D | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6bz1_A | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6bz1_B | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6bz1_C | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
6bz1_D | 3e-22 | 6 | 75 | 1 | 70 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF109153 | 0.0 | AF109153.1 Oryza sativa MADS box transcription factor MADS17 (MADS17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634419.1 | 0.0 | MADS-box transcription factor 17-like | ||||
Swissprot | Q7XUN2 | 0.0 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A0D3FZB8 | 0.0 | A0A0D3FZB8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZPN6 | 0.0 | A0A0D9ZPN6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H518 | 0.0 | A0A0E0H518_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PD48 | 0.0 | A0A0E0PD48_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0JAS4 | 0.0 | Q0JAS4_ORYSJ; MADS17 | ||||
STRING | OGLUM04G22680.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI04G24470.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS04T0580700-01 | 0.0 | (Oryza sativa) | ||||
STRING | OBART04G22790.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-92 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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