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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G21020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 237aa MW: 25041.6 Da PI: 10.24 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.9 | 2.3e-25 | 141 | 185 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ ONIVA04G21020.1 141 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 185 69***************************************9987 PP | |||||||
2 | QLQ | 54.2 | 4.5e-19 | 74 | 110 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k ONIVA04G21020.1 74 SALTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWK 110 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-6 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.217 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-11 | 75 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.072 | 141 | 185 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.4E-21 | 142 | 183 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLAEGRQVYS PPPPPPSKLP RLSGTDPTDG VVTMAAPSPL VLGLGLGLGG SGSDSSGSDA 60 EASAATVREA RPPSALTFMQ RQELEQQVLI YRYFAAGAPV PVHLVLPIWK SIAAASSFGP 120 QSFPSLTGLG SLCFDYRSSM EPEPGRCRRT DGKKWRCSRD VVPGHKYCER HVHRGRGRSR 180 KPMEASAAVA PTYLPVRPAL HTVATLATSA PSLSHLGFSS ASKVLLAHTT TGTTRAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 182 | GRGRSRKPM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110934 | 0.0 | AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635359.1 | 1e-139 | growth-regulating factor 12 | ||||
Swissprot | Q6AWX7 | 1e-140 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A0E0H4P5 | 1e-169 | A0A0E0H4P5_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8AT60 | 1e-169 | B8AT60_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA04G21020.1 | 1e-170 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-37 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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