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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G20570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 363aa MW: 35957.8 Da PI: 8.6707 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 59 | 120 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss ONIVA04G20570.1 59 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 120 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 55 | 117 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-33 | 61 | 117 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 63 | 117 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 65 | 101 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEEMLMAANA AAGANPNPAA TAPSSVTGGA LRGGGGGGAP PVAGGAGAGS TERRARPQKE 60 KALNCPRCNS TNTKFCYYNN YSLQQPRYFC KTCRRYWTEG GSLRNVPVGG GSRKNKRSSS 120 SAASASPASA STANSVVTSA SMSMSMASTG GGASKNPKLV HEGAQDLNLA FPHHGGLQAP 180 GEFPAFPSLE SSSVCNPGGP MGTNGRGGGA LSAMELLRST GCYMPLQVPM QMPAEYATPG 240 FALGEFRAPP PPPQSSQSLL GFSLDAHGSV GGPSAAGFGS SAGLQGVPES TGRLLFPFED 300 LKPTVSSGTG GGGASGGGAG VDGGHQFDHG KEQQAGGGGG GPGGHDTPGF WNGMIGGGSG 360 TSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855149 | 0.0 | CR855149.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0103M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637009.1 | 0.0 | dof zinc finger protein 1 isoform X2 | ||||
Swissprot | Q9SXG8 | 0.0 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | A0A0E0H4I6 | 0.0 | A0A0E0H4I6_ORYNI; Uncharacterized protein | ||||
STRING | OS04T0567800-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA04G20570.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-42 | Dof family protein |
Publications ? help Back to Top | |||
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