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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G18450.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 254aa MW: 26988.1 Da PI: 4.8996 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ ONIVA04G18450.3 4 QCDVCAAEAASVFCCADEAALCDACDRRVHSAnklagkHR 43 7**************************9996566777776 PP | |||||||
2 | zf-B_box | 26.3 | 1.6e-08 | 59 | 92 | 2 | 35 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35 +++ C+ ++ek+ lfC++++ lC++C ++ H ONIVA04G18450.3 59 KPPLCDICQEKRGFLFCKEDRAILCRECDVAVHT 92 6899***************************994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-11 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.71E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 2.1E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.4E-14 | 58 | 105 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.168 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.6E-7 | 59 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.74E-9 | 61 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKLAG KHRRFSLLQP LASSSSAQKP 60 PLCDICQEKR GFLFCKEDRA ILCRECDVAV HTTSELTRRH GRFLLTGVRL SSAPMDSPAP 120 SEEEEEEAGE DYSCSPSSVA GTAAGSASDG SSISEYLTKT LPGWHVEDFL VDEATAAAAA 180 ASSSSDGLFQ GGLLAQIGGV PDGYAAWAGR EQLHSGVAVA ADERASRERW VPQMNAEWGA 240 GSKRPRASPP CLYW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061333 | 0.0 | AK061333.1 Oryza sativa Japonica Group cDNA clone:006-303-A11, full insert sequence. | |||
GenBank | CT830169 | 0.0 | CT830169.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102E21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634023.1 | 1e-175 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 7e-56 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0E0H3P4 | 0.0 | A0A0E0H3P4_ORYNI; Uncharacterized protein | ||||
STRING | ORUFI04G21820.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 9e-29 | salt tolerance homolog2 |